Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0188 ATGGCTAACTGTGTTTGCAGTTTATTGATTATGGTCCTTTATGTCATGCTGCTACCATCAATCATTGTTACCAGCATTGCACCTTCGTCTAATTACACGTCCACAAATGAGGAACATCAGGCTTTGCTCCAGAGCGGTTGGTGGTATGCTTACCAAAATATCTCAGACCATTGTTATTGGGATGGTGTCTTTTGTAATGAAGCTGGAAGTGTTACTCAGATTTACCCGGATTATTTGAACATTCCTCCATTAGAAGAATTGCGGCGGATTCAGAAGTTGAACGTGAGTGCCTTCCCCAATTTAGTCTATCTAGATCTAAATGGAATGGCTCTTACAGGAACCATTCCTAAAGAAATAAGCACACTTACAAAGCTTACCTATCTTGTCCTGTCCAACAATTGTCTTCAAGGTTCAATTCCAGTAGAAATATGGAATTTGACACAATTGGTGGAACTATATCTCGATAATAATTCACTGACGGGTTCAATTCCTTCTACTTTGGGTCGATTGAAGAATTTAGTCTTTCTCATCCTTGATTCTAACCATATTCAAGGTGAGCTTATGCCTAAAGCATTTTCAAATCTCACTCAACTTAAGCACCTTGATGTTTCTAGGAATTCTCTGAGCGGTGTCATCCCATCTACATTGGGTGAATTGAAGAATTTGGAGCATCTCTCCCTTTATTCAAACAAATTTGAAGGTCTCTTACCAATGGAAGTAGGGAATTTGACACAATTAAAGGAATTATATCTCTCAAACAATTCACTCACAGGTTCAATTCCCTCTACTTTGAGTCAACTAGAGAATTTGACATATCTCTTCCTTGATTCTAACCATATTGAAGGCCGGCTCATGCCTAAAACACTTTCAAATCTCACTGAACTTAAGCACCTTGATGTTTCCTGGAATTCTCTCAGGGGTGTCATCCCATCTACATTGGGTGAATTGAAGAATTTGGTCAAACTCTACCTTCAATCAAACCAATTTGAAGGTCACTTACCAATAGAAGTAGGGAATTTAACACAATTACAGGAACTAATTCTCTCAAACAATTCACTTACAGGTTCAATTTCTTCTAGTTTGGGTCAATTACAGAATTTGACTATGCTCCTCCTTGATTCTAACCATATTGAAGGTAAGCTCATGCCTAAAATGTTTTCAAATCTCACTCAACTTGAGCAACTTGATGTTTCAGGGAACTCTCTTAGTGGTGTCATCCCATGTACATTGGGTCAATTGAATAATTTGGGGCATCTCTCCCTTCATTCAAACAAATTTGAAGGTACCATACCTTCTACATTGGGTCAATTGAAGAATTTGGAGCATCTCTCCCTTCATTCAAACAAACTTGAAGGTACCATACCTTCTACTTTGGGTCAATTAGGGAATCTGACAAATCTCTCCCTTAGTTCTAACCAAATTACTGGTCCCATACCAGTAGAATTTGGAAACCTCACATCTTTAAAAATATTATCTCTCTCAAACAATTTACTCACTGGTTCAATTCCTCCTACTATGGGTCGATTGAAGGTGATGATAAATCTCTTCCTTGATTCTAACCAAATTACTGGCCCCATCCCCATAGAATTATGGAACTCGACAGGTTTAATATTATTAAATCTATCACACAACTTTCTTTCGGGTTCAATACCTTCAGAGATTGCACAAGCCTATTATCTTTATGATGTTGACCTTTCCCACAACAATTTTACAATCCTATCTCCATTCCTAAAATGTCCCTATATCCAGAAAGTGGATTTAAGCTACAACTTGTTAAATGGAAGCATCCCTTCCCAAATCAGTTGTATTCATAATCTTAACCTTAGCCATAATTTTTTGAAAGGTGAAATTCCTCATATTTCATCAGAAGCAAATTCCATATTAGATAGCTTGGATCTTAGCTATAACAATCTCACAGGTAAGCTACATAGAGAATTTGCTACTCTGTCATATATAAACCTTTCGTACAATTCATTTGACTTCTCGCAAGACCTTGAGTCAGAGTTTCCAGACTATTGTTATTTTGGGGAAGACTCATTAATTAGTTACCACATGCCAAATTTCACATCCTGCTACCTTACACATATCAATTCTGTCCACCAAACCAATCCTCGAACTAAAAAAGGCAAGCCTTTCATGTTAATTGTTCTTCCTATCATTTGCTTCATTCTAGTGGTACTTCTGTCAGCATTATATTTCAGAAGATGTGTGTTTCAGACCAAATTTGAAGGAAAATCAACAAAGAATGGAAACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCGTTTGAAGACATCATTGAAGCAACCGAGGACTTTCACATCAAGTACTGCATTGGGACTGGTGCTTATGGTAGTGTCTATAGAGCCCAATTGCCGAGCGGTAAAATTGTTGCATTGAAGAAACTTCACCAAATGGAATCTCAAAATCCATCTTTTAACAAAAGTTTTCACAATGAAGTCAAAATGTTAACACAAATCCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGTCTCCACAATCGTTGCATGTTTCTTGTCTATCAATACATGGAAAGAGGTAGCTTATTTTATGCCTTGAATAATGATGAGGAAGTTCAGGAGTTGAATTGGAGTAAGAGGGTGAATATCATTAAAGGAATGGCACATGCTTTGTCCTACATGCATCATTATTGTACTCCACCAATTGTTCATCGGGATGTAACAAGTAGCAATGTTCTACTAAACTCACAATTAGAGGCTTTTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCCGATTCTTCAAATCAAACTTTGGTAGCAGGCACATATGGCTACATTGCCCCAGAACTTGCCTATACAATGAATGTCACGGAAAAATGTGATGTTTACAGTTTTGGAGTGGTGACTTTGGAAACATTAATGGGAAGGCATCCTGGAGAGCTAATCTCATCTTTATCAAACTCAACTGCTCAAAACATGTTGTTGAAGGACATCTTAGATGCACGTCTTCCTCTTCCTAACTTTGGAAAAGACACTCATGATATAATGCTTGCAGTAACAATAGCATTAGCATGTTTGTGTCTCAAACCAAAGTTCAGGCCATCAATGCAACAAGTTGTTGGGCAGTTCTCTAATTTCAAATTGCCACTGTCTTTGCCTTTCCATGAGATTTTGATCCATCAGTTGATGACTCCAGATATGTTGTCTTTCATCCAAGTGTGA 3216 0.3762 MANCVCSLLIMVLYVMLLPSIIVTSIAPSSNYTSTNEEHQALLQSGWWYAYQNISDHCYWDGVFCNEAGSVTQIYPDYLNIPPLEELRRIQKLNVSAFPNLVYLDLNGMALTGTIPKEISTLTKLTYLVLSNNCLQGSIPVEIWNLTQLVELYLDNNSLTGSIPSTLGRLKNLVFLILDSNHIQGELMPKAFSNLTQLKHLDVSRNSLSGVIPSTLGELKNLEHLSLYSNKFEGLLPMEVGNLTQLKELYLSNNSLTGSIPSTLSQLENLTYLFLDSNHIEGRLMPKTLSNLTELKHLDVSWNSLRGVIPSTLGELKNLVKLYLQSNQFEGHLPIEVGNLTQLQELILSNNSLTGSISSSLGQLQNLTMLLLDSNHIEGKLMPKMFSNLTQLEQLDVSGNSLSGVIPCTLGQLNNLGHLSLHSNKFEGTIPSTLGQLKNLEHLSLHSNKLEGTIPSTLGQLGNLTNLSLSSNQITGPIPVEFGNLTSLKILSLSNNLLTGSIPPTMGRLKVMINLFLDSNQITGPIPIELWNSTGLILLNLSHNFLSGSIPSEIAQAYYLYDVDLSHNNFTILSPFLKCPYIQKVDLSYNLLNGSIPSQISCIHNLNLSHNFLKGEIPHISSEANSILDSLDLSYNNLTGKLHREFATLSYINLSYNSFDFSQDLESEFPDYCYFGEDSLISYHMPNFTSCYLTHINSVHQTNPRTKKGKPFMLIVLPIICFILVVLLSALYFRRCVFQTKFEGKSTKNGNLFSIWNYDGKIAFEDIIEATEDFHIKYCIGTGAYGSVYRAQLPSGKIVALKKLHQMESQNPSFNKSFHNEVKMLTQIRHRNIVKLHGFCLHNRCMFLVYQYMERGSLFYALNNDEEVQELNWSKRVNIIKGMAHALSYMHHYCTPPIVHRDVTSSNVLLNSQLEAFVSDFGTARLLDPDSSNQTLVAGTYGYIAPELAYTMNVTEKCDVYSFGVVTLETLMGRHPGELISSLSNSTAQNMLLKDILDARLPLPNFGKDTHDIMLAVTIALACLCLKPKFRPSMQQVVGQFSNFKLPLSLPFHEILIHQLMTPDMLSFIQV* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0188 1071 ProSitePatterns Tyrosine protein kinases specific active-site signature. 898 910 IPR008266 GO:0004672|GO:0006468
Gso3g0188 1071 Gene3D Ribonuclease Inhibitor 418 691 IPR032675 -
Gso3g0188 1071 SUPERFAMILY L domain-like 383 662 - -
Gso3g0188 1071 ProSiteProfiles Protein kinase domain profile. 774 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0188 1071 Pfam Leucine Rich Repeat 295 315 IPR001611 GO:0005515
Gso3g0188 1071 Pfam Protein kinase domain 775 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0188 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 285 570 - -
Gso3g0188 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 33 380 - -
Gso3g0188 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 383 1060 - -
Gso3g0188 1071 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Gso3g0188 1071 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Gso3g0188 1071 Pfam Leucine rich repeat 242 280 IPR001611 GO:0005515
Gso3g0188 1071 Pfam Leucine rich repeat 172 232 IPR001611 GO:0005515
Gso3g0188 1071 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Gso3g0188 1071 Gene3D Ribonuclease Inhibitor 286 417 IPR032675 -
Gso3g0188 1071 SMART LRR_sd22_2 340 363 - -
Gso3g0188 1071 SMART LRR_sd22_2 485 517 - -
Gso3g0188 1071 SMART LRR_sd22_2 219 237 - -
Gso3g0188 1071 SMART LRR_sd22_2 316 337 - -
Gso3g0188 1071 SMART LRR_sd22_2 267 294 - -
Gso3g0188 1071 SMART LRR_sd22_2 364 391 - -
Gso3g0188 1071 SMART LRR_sd22_2 170 197 - -
Gso3g0188 1071 SMART LRR_sd22_2 461 482 - -
Gso3g0188 1071 SMART LRR_sd22_2 437 452 - -
Gso3g0188 1071 SMART LRR_sd22_2 243 266 - -
Gso3g0188 1071 SMART LRR_typ_2 316 339 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 340 363 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 267 291 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 389 412 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 122 145 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 219 242 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 195 218 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 364 388 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 146 169 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 485 509 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 243 266 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 292 315 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 170 194 IPR003591 -
Gso3g0188 1071 SMART LRR_typ_2 437 461 IPR003591 -
Gso3g0188 1071 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Gso3g0188 1071 Gene3D Transferase(Phosphotransferase) domain 1 853 1047 - -
Gso3g0188 1071 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 33 380 - -
Gso3g0188 1071 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 383 1060 - -
Gso3g0188 1071 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 285 570 - -
Gso3g0188 1071 Gene3D Ribonuclease Inhibitor 188 285 IPR032675 -
Gso3g0188 1071 Gene3D Phosphorylase Kinase; domain 1 737 852 - -
Gso3g0188 1071 ProSiteProfiles Leucine-rich repeat profile. 245 267 IPR001611 GO:0005515
Gso3g0188 1071 SUPERFAMILY Protein kinase-like (PK-like) 756 1039 IPR011009 -
Gso3g0188 1071 SUPERFAMILY RNI-like 104 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0188 Gso-Chr3 2502856 2507701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0188 9 946 Receptor kinase-like Gene Family AT4G08850 37.049 8.72e-176 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g0188 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0188 - - gmx:102667972 2081.99