Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0187 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTACCATGTGGCTCCGAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGTGGGGTTGGATGGAACAGTTAAGAAGAAACGGGGTAGACCGAGGAAATATGGGCCTGATGGGTCTGTAACTATGGCATTGTCGCCAATGCCAATCTCGTCTTCTGCTCCGCCTTCGAATGACTTTTCATCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCGTCGAAAAAAGTTGGCTTGGATTATATAGGTGACTTGAATGTATGCTCTGATGGTACAAATTTTATGCCACATATCATCACTGTCAATGCTGGCGAGGACATCACAATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACCGGTGGAATGTCTGTGTCGTTGGCTAGTCCTGATGGCCGTGTTGTAGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGCCAAAGTCTAATGATTATGCACCGGTAACTGTTACTCCAGCGATTGCAGTGTCTTCTGCACCGCCACCTCCAACCAATGCTGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCTAGAAAATCAGCTACAGATATTAACATATCTTTGCCTGATAGTTAG 1041 0.4697 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGAAATAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYIGDLNVCSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKPKSNDYAPVTVTPAIAVSSAPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0187 346 Gene3D - 136 265 - -
Gso3g0187 346 ProSiteProfiles PPC domain profile profile. 131 273 IPR005175 -
Gso3g0187 346 CDD DUF296 136 226 IPR005175 -
Gso3g0187 346 MobiDBLite consensus disorder prediction 83 98 - -
Gso3g0187 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 345 - -
Gso3g0187 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 253 - -
Gso3g0187 346 MobiDBLite consensus disorder prediction 24 107 - -
Gso3g0187 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 345 IPR039605 GO:0003680
Gso3g0187 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0187 Gso-Chr3 2484240 2491265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0187 10 281 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.860 6.87e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0187 - - gmx:100793726 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1217 1 48147801 48155028 Gso3g0187 3 2484240 2491265 GST
Gso18g1794 18 50394351 50399722 Gso3g0187 3 2484240 2491265 PCT
Gso9g2217 9 46513960 46519255 Gso3g0187 3 2484240 2491265 PCT
Gso3g0187 3 2484240 2491265 Gso18g1794 18 50394351 50399722 PCT
Gso3g0187 3 2484240 2491265 Gso9g2217 9 46513960 46519255 PCT