Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0180 ATGGATCCTGTTGCAGCACAAGGACGTCCTCTCCCTCCACCTTTTCTAACTAGAGATCTTCACTTACACCCTCACCATCAATTCCAGCCCCACCACAACAACCAAAACACCGAGGACGAAGCCGGCAATGGCCGCGGCCAGAAGCGAGATCGCGATGAGAACGTCGGTGGCGGAGGCGGGGCCACCACGCCCCCACACGGCGGCGGGGAGGGCAAGGAACCCGGGTCAGAAGATGGAGGAGGAAGTGACATGGGGAGAAGACCAAGAGGAAGACCCGCAGGGTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGAGACAGTGCCAACGCCCTCCGATCCCATGTCATGGAAATCACCAACGGCTGTGACATCATGGAGAGCGTCACCGCCTTCGCGAGGCGGCGGCAGCGTGGCATCTGCCTGCTCAGCGGAAGTGGCACCGTCACCAACGTCACACTCCGACAGCCGGCCTCGCCAAGTGCCGTCGTGACCCTTCACGGAAGGTTCGAGATTCTGTCCCTGTCCGGTTCATTCCTGCCGCCGCCGGCTCCGCCAGCGGCGTCAGGACTAGCCATATATCTGGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGTGTGGTGGGACCCCTTGTGGCTTCAGGCCCTGTGGTCATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTGCCATATCATGGCACCGAAGGATTAGGGTCCCCGGGAATCCCGGGGACTCAGCAACAATCACAATCGCAGCCGCAACAGCAACAACAACAGCTTGTGGGAGATCCAAATAGTTCTTCTCTTTTCCATGGAGTGCCTCAGAATCTTCTCAATTCAATTCAATTACCGGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCCTTTTAA 933 0.5745 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNNQNTEDEAGNGRGQKRDRDENVGGGGGATTPPHGGGEGKEPGSEDGGGSDMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEITNGCDIMESVTAFARRRQRGICLLSGSGTVTNVTLRQPASPSAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPYHGTEGLGSPGIPGTQQQSQSQPQQQQQQLVGDPNSSSLFHGVPQNLLNSIQLPAEGYWGGSARPPF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0180 310 MobiDBLite consensus disorder prediction 1 104 - -
Gso3g0180 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 226 IPR005175 -
Gso3g0180 310 CDD DUF296 114 225 IPR005175 -
Gso3g0180 310 PIRSF ESCAROLA 15 310 IPR014476 GO:0003680
Gso3g0180 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 310 IPR014476 GO:0003680
Gso3g0180 310 Gene3D - 113 242 - -
Gso3g0180 310 MobiDBLite consensus disorder prediction 253 286 - -
Gso3g0180 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 310 - -
Gso3g0180 310 MobiDBLite consensus disorder prediction 71 85 - -
Gso3g0180 310 MobiDBLite consensus disorder prediction 241 286 - -
Gso3g0180 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 244 - -
Gso3g0180 310 ProSiteProfiles PPC domain profile profile. 110 248 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0180 Gso-Chr3 2346101 2347758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0180 1 310 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.691 4.54e-89 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0180 - - gmx:100816243 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1227 1 48368741 48370500 Gso3g0180 3 2346101 2347758 GST