Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0173 ATGGACGGAAACCCTAAACGAGAATGGTCCCTCAACGACTTCGAGATCGGAAAGCCTCTCGGAAAAGGCAAATTCGGCAGAGTCTACGTCGCCAGAGAAGTCAAGAGTAAATTCGTGGTTGCATTGAAGGTTATTTTTAAGGAACAGCTTGAGAAGTACAGAATTCACCACCAGCTGAGGAGGGAGATGGAGATTCAGTTCAGCCTGCAGCACCAGAACGTGCTTCGTCTCTACGGTTGGTTTCATGACTCGGAGCGCGTCTATTTGATTCTCGAATATGCTCACAATGGGGAGCTTTACAAGGAGCTTAGCAAAAAAGGGCATTTTAATGAGAAGCAGGCTGCAACGTGTCAAGGTTTTGGAGGTCTCTGCAATCGCAGTGCGACTGCATTGTATATTTTAAGCCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTTATCCACAGGGATATCAAGCCTGAAAATTTGTTGCTTGACCATGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCTGTACAGTCTCGAAGCAAAAGGCATACTATGTGTGGAACCTTGGATTATTTAGCACCCGAAATGGTTGAAAACAAAGCTCATGATTACGCAGTTGATAACTGGACTCTGGGTATCCTTTGCTATGAGTTCCTTTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAAGTTGATACCTTCAAAAGGATAATGAAAGTTGACCTAAGTTTCCCTTCTACTCCTAATGTTTCTTTAGAAGCCAAAAATCTTATTAGTCGACTGCTGGTAAAAGACTCTTCACGAAGGCTCTCACTTCAGAGGATAATGGAGCATCCTTGGATAACCAAGAATGCAGATCCCAAGGGTGTCTGCAACTAG 876 0.4429 MDGNPKREWSLNDFEIGKPLGKGKFGRVYVAREVKSKFVVALKVIFKEQLEKYRIHHQLRREMEIQFSLQHQNVLRLYGWFHDSERVYLILEYAHNGELYKELSKKGHFNEKQAATCQGFGGLCNRSATALYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAESQVDTFKRIMKVDLSFPSTPNVSLEAKNLISRLLVKDSSRRLSLQRIMEHPWITKNADPKGVCN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0173 291 Pfam Protein kinase domain 14 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0173 291 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 290 IPR030616 GO:0004672
Gso3g0173 291 ProSiteProfiles Protein kinase domain profile. 14 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0173 291 Gene3D Transferase(Phosphotransferase) domain 1 98 288 - -
Gso3g0173 291 CDD STKc_Aurora 13 281 - -
Gso3g0173 291 PIRSF ILK 3 278 - -
Gso3g0173 291 SUPERFAMILY Protein kinase-like (PK-like) 7 284 IPR011009 -
Gso3g0173 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gso3g0173 291 SMART serkin_6 14 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0173 291 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
Gso3g0173 291 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0173 Gso-Chr3 2236504 2239795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0173 14 286 CBL-interacting serine-threonine protein kinases AT5G10930 37.143 5.86e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Gso3g0173 Pkinase 4.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0173 K08850 - gmx:100775802 559.296