Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0155 ATGGGTAGAGGGAGAGTTGAGTTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTAACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGAAAGCTCTATGAATTTGGAAGTGTTGGGACTACCAATACTATTGAGCGATACCAACGTAGCTCTTTTACTCCTCAAGACGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAAGTTTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGCTGCAGAATATTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCAAGACAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTACGGAAAGCTTGTTGAGCTTTACTTCAGCTGCTGGAAACAGTGGCTTTCACTTTCAGCAGCCTCCTCAAACCAATCCTATTGATTACCAGCAGCCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAATCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 738 0.4309 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTNTIERYQRSSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNIEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKATESLLSFTSAAGNSGFHFQQPPQTNPIDYQQPEPFLQIGYHQYVQSEASNVPKSMACETNFMQGWIL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0155 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso3g0155 245 Coils Coil 119 142 - -
Gso3g0155 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso3g0155 245 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Gso3g0155 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 PANTHER MADS BOX PROTEIN 1 230 - -
Gso3g0155 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 Coils Coil 148 168 - -
Gso3g0155 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Gso3g0155 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso3g0155 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso3g0155 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 230 - -
Gso3g0155 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0155 Gso-Chr3 1960315 1967660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0155 1 245 MADS-box Gene Family AT2G45650 64.567 1.42e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso3g0155 K-box 5.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0697 7 7555150 7561867 Gso3g0155 3 1960315 1967660 GST