Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0154 ATGGTGAGGGGAAAGACTCAGATAAAGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTTCAAGTGGGAAGCTCTATGAATTTGCTAGCTCCAGCATACAGTGTTCAATTGAACGATACCGCAGGCATACCAAGCATGATAATCCAACTACATTCAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAGGCAGCAAACATGATGAAGAAGATTGGCCTTCTTGAAGCTGCAAAACGGAAGTTCTTGGGGGAAGGGTTGGGGGCTTGCTCCATTGAGGAACTGCAACGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTAGAACAAGAAAGATCCAGGTTTTCAAGGAACAAATCGAGCAACTAAAAGAAAAGGAAAAAGTCCTACTTGATGAAAATGTCAAGCTCACTGAAAATGGCAGGCTCTCTGAGAAGCATGGAATCAATCTACAAACAGAAACAAAGAATCAGAATGTGAATCAACCCCAATACAATGCAGGTAGTCCAAGTTCAGATGTGGAGACCGAATTGATCATTGGACTTCCGGATACAAGAACAAGGCGCATCGTTCATCAGCTACCACAGCACCAAAATGGGCTTGAACCAAATCAAAGAAAAGAGCAACAAGGCGTTCCAAAAGAGGAACTTTGCAACCAGCAGCATGAAGAGTCACACTAA 774 0.4315 MVRGKTQIKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSSGKLYEFASSSIQCSIERYRRHTKHDNPTTFRSVEQNMQHLKQEAANMMKKIGLLEAAKRKFLGEGLGACSIEELQRIEQQLERSLSNVRTRKIQVFKEQIEQLKEKEKVLLDENVKLTENGRLSEKHGINLQTETKNQNVNQPQYNAGSPSSDVETELIIGLPDTRTRRIVHQLPQHQNGLEPNQRKEQQGVPKEELCNQQHEESH* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0154 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso3g0154 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Gso3g0154 257 Coils Coil 122 142 - -
Gso3g0154 257 MobiDBLite consensus disorder prediction 177 204 - -
Gso3g0154 257 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso3g0154 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 PANTHER MADS BOX PROTEIN 1 216 - -
Gso3g0154 257 MobiDBLite consensus disorder prediction 225 257 - -
Gso3g0154 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 MobiDBLite consensus disorder prediction 177 205 - -
Gso3g0154 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso3g0154 257 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gso3g0154 257 Coils Coil 144 171 - -
Gso3g0154 257 MobiDBLite consensus disorder prediction 239 257 - -
Gso3g0154 257 Coils Coil 81 108 - -
Gso3g0154 257 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Gso3g0154 257 PANTHER MADS-BOX PROTEIN SOC1 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0154 Gso-Chr3 1933859 1957881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0154 1 159 MADS-box Gene Family AT2G45660 77.358 3.61e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso3g0154 K-box 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0154 - - gsj:114405819 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0695 7 7494180 7518600 Gso3g0154 3 1933859 1957881 GST
Gso18g2039 18 53220638 53237935 Gso3g0154 3 1933859 1957881 PCT
Gso9g2193 9 46266268 46283469 Gso3g0154 3 1933859 1957881 PCT
Gso3g0154 3 1933859 1957881 Gso18g2039 18 53220638 53237935 PCT
Gso3g0154 3 1933859 1957881 Gso9g2193 9 46266268 46283469 PCT