Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0144 ATGGGTATCGATACCAATTTGGTGACCACTGTCATTGGCTTTGGTTTGAGTGCAACTTTCATTGTTTTTGTTTGCGCAAGAATAATTTGTGGAAGACTACGAGAGCGAACACGGACTATATATGAAATTGAAGCAATAACAGATATAGAACGGGCAGAATATCATGGTAATGACCCTGCGCCTGCTTTTGTTGCTGCAATCCCCACTTTGAATTTCAACCATGAAGCCTTCAGTTCAATTGAAACTACACAGTGTGTGATATGCTTGGCAGAGTACAAAGAAAAAGAGCTATTGCGAATCATACCTAAATGTGGCCACACATTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAGTCCACATGTCCAGTGTGTCGTTTGTCACTGCAGAATGCTCTTGAAACAAAACATGTGAGGCATGCAACGTTTACCATCAGGCATTCTCTTGATGAGTCCAATACTGCAGAAAGGAACACAGATAGTAATCAGAGGCTAGTTGAACTTGATTCTAGTAACGACTCCCAACAACCAACTTTGGGAGAACCAGAAGCTAGACAGTGA 564 0.4149 MGIDTNLVTTVIGFGLSATFIVFVCARIICGRLRERTRTIYEIEAITDIERAEYHGNDPAPAFVAAIPTLNFNHEAFSSIETTQCVICLAEYKEKELLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNALETKHVRHATFTIRHSLDESNTAERNTDSNQRLVELDSSNDSQQPTLGEPEARQ* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0144 187 SMART ring_2 85 126 IPR001841 -
Gso3g0144 187 CDD RING-H2_EL5_like 84 127 - -
Gso3g0144 187 MobiDBLite consensus disorder prediction 156 187 - -
Gso3g0144 187 Pfam Ring finger domain 84 127 IPR001841 -
Gso3g0144 187 MobiDBLite consensus disorder prediction 152 187 - -
Gso3g0144 187 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Gso3g0144 187 PANTHER OS02G0676500 PROTEIN 2 172 - -
Gso3g0144 187 PANTHER OS11G0150450 PROTEIN 2 172 - -
Gso3g0144 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Gso3g0144 187 SUPERFAMILY RING/U-box 84 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0144 Gso-Chr3 1715718 1717406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0144 75 165 C3H Transcription Factor Family AT4G10160 39.560 1.60e-19 80.9