Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0143 ATGAAACCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGTCAATCCGACGTGGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTACGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA 759 0.4532 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0143 252 MobiDBLite consensus disorder prediction 170 192 - -
Gso3g0143 252 PANTHER - 4 214 - -
Gso3g0143 252 Gene3D - 85 218 IPR012677 -
Gso3g0143 252 MobiDBLite consensus disorder prediction 223 252 - -
Gso3g0143 252 MobiDBLite consensus disorder prediction 170 252 - -
Gso3g0143 252 MobiDBLite consensus disorder prediction 72 86 - -
Gso3g0143 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Gso3g0143 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Gso3g0143 252 SUPERFAMILY RNA-binding domain, RBD 4 171 IPR035979 GO:0003676
Gso3g0143 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 214 - -
Gso3g0143 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gso3g0143 252 MobiDBLite consensus disorder prediction 72 94 - -
Gso3g0143 252 SMART rrm1_1 97 163 IPR000504 GO:0003723
Gso3g0143 252 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gso3g0143 252 Gene3D - 1 84 IPR012677 -
Gso3g0143 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0143 Gso-Chr3 1689666 1693283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0143 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 4.49e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0143 K12893 - gmx:100797778 434.106