Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0142 ATGGTGGAAGCTACTCAAGCTAGTAAAGATAACCATGTGGTTGCATTTGAAGCCCGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGCTCTTGCTAATGCAAGGGAGGTTAAGGGGTTTCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCGTCACGTTTATCGGACTTGTCAAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAAGCCGTTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGCAAACTTCGGATGCAGAGTGATCTCGATGCATTAATTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACGGGCGTGCTTGGTGAAGCTACTTTGCCATTAACAGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTTGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTACGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTTTTGGTAGGAGCAATATTTCTGCTTTAGTCCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACAGTTACCGTTATATGCTCTCTCGTGGAGTCAGGAAGTTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTCATAAGGCTTGTCGAATCTGGTAGTGCTGTGGGTAAAGAGAAGGCTACGCTATCTCTTCAGAGATTGTCAATGTCAGCTGAAACAACTCGTGCAATTGTTGGACATGGTGGTGTCCGGCCATTGATTGAGATTTGTCAAAGTGGTGATTCTGTGTCGCAGGCAGCTGCCGCCTGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTGAGGGTTATGATCAGTCTTCTTAACTGTGGAATTTTATTAGGTTCCAAAGAGTATGCAGCAGAATGCTTGCAGAATCTCACTTCAAGCAATGAGTATCTGAGAAAGTCTGTGATATCAGAAGGCGGTGTTAGGAGTCTTCTGGCTTATCTTGACGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCTTTGAAAAATCTGATTGGATCAGTTTCTGAGGAAACTTTAGTTTCTCTTGGTTTGGTTCCCTGTTTGGTTCACGTGCTGAAGTCCGGATCATTGGGTGCTCAACAAGCTGCTGCGTCTATCATCTGCCGTGTTTGCAGCTCAATGGAGATGAAGAAAATAGTTGGTGAAGCCGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAGCAAATAATGCTAGAGAGGTTGCTGCTCAAGCGATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAGGATGATAAAAGTGTGCCAAATCTGGTCCAGTTGCTTGATCCAAGCCCCCAGAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTTTCTCCAAGTAAGAAATGTAAGAAACTGATGATTTCATACGGAGCAATTGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTGCTAGAGCGATTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1698 0.4423 MVEATQASKDNHVVAFEARSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLKEAVELAELCVKEKYEGKLRMQSDLDALIGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVFGRSNISALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVGKEKATLSLQRLSMSAETTRAIVGHGGVRPLIEICQSGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVRVMISLLNCGILLGSKEYAAECLQNLTSSNEYLRKSVISEGGVRSLLAYLDGPLPQESAVGALKNLIGSVSEETLVSLGLVPCLVHVLKSGSLGAQQAAASIICRVCSSMEMKKIVGEAGCIPLLIKMLEAKANNAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0142 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 565 - -
Gso3g0142 565 Gene3D - 397 545 IPR011989 -
Gso3g0142 565 SMART arm_5 435 475 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 313 354 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 356 394 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 272 312 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 190 230 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 476 518 IPR000225 GO:0005515
Gso3g0142 565 SMART arm_5 395 434 IPR000225 GO:0005515
Gso3g0142 565 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 565 - -
Gso3g0142 565 Coils Coil 452 472 - -
Gso3g0142 565 Gene3D - 157 394 IPR011989 -
Gso3g0142 565 SUPERFAMILY ARM repeat 161 542 IPR016024 -
Gso3g0142 565 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0142 Gso-Chr3 1683675 1687268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0142 211 484 U-box Gene Family AT3G54790 27.240 1.75e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0142 - - gmx:100809488 1062.75