Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0136 ATGAGTTTTGGGGGTTTTTTAGACGACAAATCAGGTAGTGGCGGTGCCAGAATCAACAATTTTTCAGATATTCCTTACAATAACAACAACGTTACCAACACCACCACCACCAACAACAACAACAACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTCGTGACCACAACTCCCACTTTAGCCAAATCCATGTTCAACTCACCAGGGCTATCTCTGGCACTTCAAACGAGTATAGATGGACAAGAAGATGTGAATAGAATGGCTGAGAATAGCTTCGAACCGAACGGTTTGAGAAGAAGCCGTGAAGATGAACATGAAAGCAGATCTGGCAGCGACAACATGGACGGCGGTTCCGGCGACGAACACGACGCCGCCGACAACCCTCCGAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAAAAGCAAAGGCTTGAACTGAGTAGAAGGCTGTGTTTGGAAACTCGTCAGGTGAAGTTTTGGTTCCAAAATCGTCGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACGTTGCTGAGGCAAGAGAACGACAAGCTTCGAGCGGAGAACATGTCCATAAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGCGGCCTAGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCACCTCCGCATCGAGAATGCGCGCCTCAAGGACGAACTTGACCGCGTGTGTGCACTCGCGGGCAAGTTCTTGGGGCGCCCCGTTTCCTCCCTGCCGAGTCTAGAGCTCGGGATGGGAGGAAACGGGTTCGCAGGAATGCCCGCGGCAACATTGCCGCTGGCACAAGATTTCGCAATGGGTATGTCTGTGTCAATGAATAATAATGCGTTGGCTATGGTGTCTCCACCGACTAGTACTAGGCCGGCCGCGGCCGGATTCGATAGGTCGGTGGAGAGGTCGATGTTTCTCGAGCTAGCCTTGGCTGCTATGGATGAGTTGGTGAAGATGGCGCAGACTGGGGAACCTCTTTGGATGAGGAATGTTGAAGGAGGGAGGGAAATTTTGAACCATGAGGAGTACGTGAGGAACTTCACTCCTTCCATTGGTTTGAGACCCAATGGTTTTGTGTCTGAGGCCTCTAGGGAAAATGGGATGGTCATCATTAACAGCTTGGCACTTGTTGAGACTCTTATGGACTCGAATCGGTGGGCAGAGATGTTTCCTTGTATCATTGCCAGAACATCCACCACGGAAGTGATATCTAGTGGAATTAACGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTTCCGGTTCGTGAGGTGAATTTCCTACGGTTTTGCAAGCAGCACGCAGAAGGGTTGTGGGCTGTGGTGGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCCACTTTTGTGAACGGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTATTCCAAGGTGACATGGGTGGAGCATGCAGAATACGAAGAAAGCCAAGTTCACCAGCTCTATAGGCCTTTGTTGAGCTCAGGCATGGGGTTTGGTGCCCAACGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGCCTTGCCATTCTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCCGCAATAACAGCAGGGGGAAGGAGGAGCATGGTGAAGCTGGCGCAGCGGATGACGAACAACTTCTGCGCGGGGGTGTGCGCCTCGACGGTGCACAAGTGGAACAAGCTCAACGCCGCCGCTAACGTCGACGAGGATGTCAGGGTCATGACGCGCAAGAGCGTCGACGACCCCGGGGAGCCGCCGGGGATCGTCCTCAGCGCCGCCACCTCCGTCTGGCTACCCGTCTCCCCCCACCGCCTCTTCGACTTCCTCCGCGACGAGCGCCTCCGCAGCGAGTGGGACATCCTCTCCAACGGTGGCCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACGCCGTCTCTCTCCTTAGAGCCAGTGCGATAAATTCCAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCAGCAGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCAGCCATGCACGTGGTGATGAACGGTGGCGATTCGGCTTACGTGGCGTTGTTACCTTCAGGGTTCGCGATCGTCCCCGATGGGCCTGGGTCTCGTGGGCCTCATCAGAACGGGCCCACTTCCTCAACAACAACAACAACAAACGGCGGTGATAACGGCGTGACGCGCGTGAGTGGGTCCCTCCTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTCCCTACGGCGAAGCTCACGGTAGAGTCCGTGGAAACCGTGAACAACCTCATCTCCTGCACCGTTCAAAAGATCAAAGCCGCGCTACACTGCGAAAGTTAA 2508 0.5391 MSFGGFLDDKSGSGGARINNFSDIPYNNNNVTNTTTTNNNNNDRMPFGAISQPRLVTTTPTLAKSMFNSPGLSLALQTSIDGQEDVNRMAENSFEPNGLRRSREDEHESRSGSDNMDGGSGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGLAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLPSLELGMGGNGFAGMPAATLPLAQDFAMGMSVSMNNNALAMVSPPTSTRPAAAGFDRSVERSMFLELALAAMDELVKMAQTGEPLWMRNVEGGREILNHEEYVRNFTPSIGLRPNGFVSEASRENGMVIINSLALVETLMDSNRWAEMFPCIIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDSIRESSGAPTFVNGRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNAAANVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPHRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNAVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPHQNGPTSSTTTTTNGGDNGVTRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0136 835 Gene3D - 404 557 IPR023393 -
Gso3g0136 835 SUPERFAMILY Bet v1-like 587 828 - -
Gso3g0136 835 SUPERFAMILY Homeodomain-like 116 190 IPR009057 -
Gso3g0136 835 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Gso3g0136 835 MobiDBLite consensus disorder prediction 764 783 - -
Gso3g0136 835 MobiDBLite consensus disorder prediction 21 48 - -
Gso3g0136 835 MobiDBLite consensus disorder prediction 90 140 - -
Gso3g0136 835 ProSiteProfiles START domain profile. 327 563 IPR002913 GO:0008289
Gso3g0136 835 MobiDBLite consensus disorder prediction 97 132 - -
Gso3g0136 835 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Gso3g0136 835 SMART HOX_1 131 194 IPR001356 GO:0003677
Gso3g0136 835 Pfam START domain 336 560 IPR002913 GO:0008289
Gso3g0136 835 MobiDBLite consensus disorder prediction 757 783 - -
Gso3g0136 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 832 IPR042160 -
Gso3g0136 835 Coils Coil 184 216 - -
Gso3g0136 835 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Gso3g0136 835 CDD START_ArGLABRA2_like 331 559 - -
Gso3g0136 835 CDD homeodomain 132 190 IPR001356 GO:0003677
Gso3g0136 835 SUPERFAMILY Bet v1-like 329 560 - -
Gso3g0136 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 77 832 - -
Gso3g0136 835 Gene3D - 120 206 - -
Gso3g0136 835 SMART START_1 336 560 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0136 Gso-Chr3 1593008 1601172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0136 1 835 Homeobox Transcription Factor Family AT3G61150 63.797 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso3g0136 START 7e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0136 K09338 - gmx:100818372 1614.36