Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0122 ATGGGGGAAGAGAATGAAGAAACAAAAACATTTAAGGATTTGGGCTTATCCGAGTCATTGGTGGAAGCTTGCGAAAAATTGGGTTGGAAAAATCCATTAAAGATACAGACAGAAGCAATTCCTCTTGCATTGGAAGGAAAAGATGTGATAGGACTTGCCCAAACTGGTTCCGGTAAGACTGGAGCTTTTGCTCTTCCCATATTGCATGCCTTATTAGAAGCACCACGCCCAAAAGATTTCTTTGCTTGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCGGAACAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCCGTGCTTGTTGGAGGAATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTTGGGACTCCTGGACGAGTTATAGATCACCTAAAACACACTAAAGGATTTTCTCTTAGTAGATTAAAATACTTGGTCTTAGATGAGGCAGATAGGTTGTTGAATGAGGACTTTGAAGAATCACTTAATGAGATTTTACAAATGATTCCTCGTGAGCGGAGGACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTGCAAAGGGTTTGTTTAAGGAATCCCGTGAAGATTGAAGCATCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTTTTGCCTGCTAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGCACTTGTGATGCAACTCGGCTTCTAGCTTTGATCCTTAGGAATCTTGGTCTAAAGGCCATCCCCATTAATGGTCATATGAGCCAGTCAAAGAGACTTGGAGCCTTGAATAAGTTCAAATCTGGGGAATGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCGACTGTAGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGCGTGGGAAGGACTGCTCGTGCAGGGCGCTCTGGGGTCGCCATTTCCCTTGTAAATCAGTATGAACTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCACAAGAAGAGGAAGTTCTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCCGTCATGAAAATGAAGGAGACTGGAGGGAAGAAGAAACGGAGGGGCGAAGAAGATTATGATGGAGAGGATATAGACAAGTACTTGGGTCTCAAGGAAGGAAAATCATCCAAAAAGTTTAGAAGAAGATGA 1320 0.4197 MGEENEETKTFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVIDHLKHTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVGEAKRLAVMKMKETGGKKKRRGEEDYDGEDIDKYLGLKEGKSSKKFRRR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0122 439 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Gso3g0122 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Gso3g0122 439 Gene3D - 219 390 IPR027417 -
Gso3g0122 439 PANTHER RNA HELICASE 2 426 - -
Gso3g0122 439 SMART ultradead3 28 228 IPR014001 -
Gso3g0122 439 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Gso3g0122 439 Gene3D - 2 218 IPR027417 -
Gso3g0122 439 CDD SF2_C_DEAD 225 354 - -
Gso3g0122 439 PANTHER BNAC02G41920D PROTEIN 2 426 - -
Gso3g0122 439 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Gso3g0122 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Gso3g0122 439 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Gso3g0122 439 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Gso3g0122 439 SMART helicmild6 264 345 IPR001650 -
Gso3g0122 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0122 Gso-Chr3 1468969 1477212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0122 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.117 2.87e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0122 K14777 - gmx:100775796 843.958