Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0114 ATGTCATTCACAGGAACTCTTGATAAATGCACAGCATGTGATAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGAATTACTTACCATAAAAACTGCTTCAAATGCAGCCACTGCAAGGGATGTCTTACGATGAGCACATACTCCTCAATGGATGGAATTCTTTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTGCAAAGTCTTCCGAGAAACAAAACGACCTGAATAGAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTTGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCCCTTGATGGTGTCCTCTACTGTAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAGAAGGACTGGTTCCTCTACACCTCCACTACTAGAGGAGCCATCAGAAGAGCCAGCACCAGAATCTCATGAGGACAAAACAGAAGACACCTCTTGA 621 0.4412 MSFTGTLDKCTACDKTVYVVDLLTLEGITYHKNCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSEKQNDLNRTPSKLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECFHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHRRTGSSTPPLLEEPSEEPAPESHEDKTEDTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0114 206 MobiDBLite consensus disorder prediction 191 206 - -
Gso3g0114 206 Pfam LIM domain 104 159 IPR001781 -
Gso3g0114 206 Pfam LIM domain 10 65 IPR001781 -
Gso3g0114 206 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Gso3g0114 206 SMART lim_4 103 155 IPR001781 -
Gso3g0114 206 SMART lim_4 9 61 IPR001781 -
Gso3g0114 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gso3g0114 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Gso3g0114 206 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Gso3g0114 206 MobiDBLite consensus disorder prediction 176 206 - -
Gso3g0114 206 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gso3g0114 206 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gso3g0114 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gso3g0114 206 Gene3D Cysteine Rich Protein 5 72 - -
Gso3g0114 206 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Gso3g0114 206 Gene3D Cysteine Rich Protein 100 168 - -
Gso3g0114 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0114 Gso-Chr3 1379549 1382035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso3g0114 LIM 3.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0114 - K09377 gmx:100800234 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0643 7 6844327 6847049 Gso3g0114 3 1379549 1382035 GST
Gso18g1986 18 52463060 52465584 Gso3g0114 3 1379549 1382035 PCT
Gso9g2156 9 45848959 45850886 Gso3g0114 3 1379549 1382035 PCT
Gso3g0114 3 1379549 1382035 Gso18g1986 18 52463060 52465584 PCT
Gso3g0114 3 1379549 1382035 Gso9g2156 9 45848959 45850886 PCT