Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0109 ATGAATCACAACAACAACAATAGAGCGAGGTACCCTCCCGGGATGGGGATTGGTCGCGGAGGTTTCAATCCCAACCTGGGCCAGAACCCGAGCCTGAACCAGAACCCGAACCTGAACCAGAATCATCACGCGTTCCAGGCTCGGCCGCCGTACCACCACCAGCAACAACAGCCGCAGTATGTGCAGAGGCATTTGTTGCAGCCGCCGCCGCCGCAGCAGCAGCAGCAGTGGCTGAGAAGGGATGCCAATGCCGTCGACGAGGTCGAGAAGACCGTGCAGTCCGAACCCATGGATTCGAGTTCCCAAGATTGGAAAGCAAGACTAAAGATTCCACCAGCTGATACTCGCTATAGGACAGAGGATGTAACGGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCATTGCAGACTTCTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCCGATAAGCTTCTGTCCCCAGAGTTTCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAACTCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAGGATAGGTATCTTCGAAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTAAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGCGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTAAATGTTGTTATTAATTTTGATTTTCCCAAGAATGCGGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCTGTGAACTTGATTACCTATGAGGATCGCTTTAATCTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCCCCACAAATTGATCAGGCAATTTATTGCCGGTGA 1509 0.4354 MNHNNNNRARYPPGMGIGRGGFNPNLGQNPSLNQNPNLNQNHHAFQARPPYHHQQQQPQYVQRHLLQPPPPQQQQQWLRRDANAVDEVEKTVQSEPMDSSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPTTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0109 502 CDD DEADc_DDX6 130 330 - -
Gso3g0109 502 SMART helicmild6 379 460 IPR001650 -
Gso3g0109 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Gso3g0109 502 MobiDBLite consensus disorder prediction 1 43 - -
Gso3g0109 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 6 502 - -
Gso3g0109 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Gso3g0109 502 MobiDBLite consensus disorder prediction 24 43 - -
Gso3g0109 502 Pfam Helicase conserved C-terminal domain 354 460 IPR001650 -
Gso3g0109 502 SMART ultradead3 147 343 IPR014001 -
Gso3g0109 502 CDD SF2_C_DEAD 340 469 - -
Gso3g0109 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Gso3g0109 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 482 IPR027417 -
Gso3g0109 502 Gene3D - 333 502 IPR027417 -
Gso3g0109 502 Pfam DEAD/DEAH box helicase 153 317 IPR011545 GO:0003676|GO:0005524
Gso3g0109 502 Gene3D - 87 332 IPR027417 -
Gso3g0109 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Gso3g0109 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 6 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0109 Gso-Chr3 1314789 1321561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0109 128 499 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 1.10e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0109 K12614 - gmx:106794117 959.903