Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0106 ATGAATCACAACAACAACAATAGAGCGAGGTACCCTCCCGGGATGGGGCTTGGGCGCGGTGGTTTCAATCCGAACCCGAGCCAGAACCCGAACTTGAACCAGAACCCGAGCCTGAACCAGAATCATCACGCGTTCCAGGCTCGGCCACCGTACCACCACCAGCAACAACGGGTGCAGTACGTGCAGAGGCATTTGCTGCAGCAACAGCAGCAGCAATGGCTGAGAAGGGACGGCAGCGCCGCCGTCGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGTTCTCAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACTCGCTATAAAACAGAGGATGTAACGGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAATTGGCATTGCAAACTTCTCAAGTGTGCAAAGAGCTTGCAAAGCACTTGAAGATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCCGATAAGCTTCTGTCCCCAGAGTTTCAACCTTCTATAGAGCAGCTGATTCATTGTCTTCCTACAACCCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCGAAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACTCAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACGGAACTTGGTTATTCATGTTTCTACATTCATGCAAAGATGTTGCAGGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGATATTCAAGCAGTTAACGTTGTTATTAATTTTGATTTTCCCAAGAACGCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTGGGTTTAGCAGTGAACTTGATTACCTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCCCCACAAATTGATCAGGCAATTTATTGCCGGTGA 1500 0.434 MNHNNNNRARYPPGMGLGRGGFNPNPSQNPNLNQNPSLNQNHHAFQARPPYHHQQQRVQYVQRHLLQQQQQQWLRRDGSAAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELAKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHCLPTTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0106 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 7 499 - -
Gso3g0106 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Gso3g0106 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 496 IPR001650 -
Gso3g0106 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 479 IPR027417 -
Gso3g0106 499 MobiDBLite consensus disorder prediction 1 42 - -
Gso3g0106 499 Gene3D - 83 329 IPR027417 -
Gso3g0106 499 CDD SF2_C_DEAD 337 466 - -
Gso3g0106 499 Gene3D - 330 499 IPR027417 -
Gso3g0106 499 CDD DEADc_DDX6 127 327 - -
Gso3g0106 499 SMART helicmild6 376 457 IPR001650 -
Gso3g0106 499 MobiDBLite consensus disorder prediction 22 42 - -
Gso3g0106 499 Pfam DEAD/DEAH box helicase 150 314 IPR011545 GO:0003676|GO:0005524
Gso3g0106 499 Pfam Helicase conserved C-terminal domain 351 457 IPR001650 -
Gso3g0106 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 7 499 - -
Gso3g0106 499 SMART ultradead3 144 340 IPR014001 -
Gso3g0106 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Gso3g0106 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 326 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0106 Gso-Chr3 1301929 1308149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0106 127 496 Eukaryotic Initiation Factors Gene Family AT3G19760 38.172 3.68e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0106 K12614 - gmx:100818905 942.954