LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0078	ATGGCTGTGGTGAGTCCTATGCCTGCAACTCCACCACAGGTCAATCCTGTGAACTTGCTTCGTAATACTGGGGTTCCTGGAATCATGACTAGTAGGAGAGAAATTGTAAATGAACCTAGTCCAAGTATGGTTAATGAGACAATCTATGTTGCCGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATACAGAACTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCCTTGGCCTTGATGGGTGCCAAATTTCCTGCAAGTGCGCTGAGAGAGGAGGGAGTTCAAGATTACCACGAAAGAGAAAGACTAAAAATGCACAAGACTCTGGATGCTTACCTTTTTATCTGTCAAAGGATGGGGGTTCGTGCAAGGAAACTACTACACATTGAAATGGATTGCATAGAAAAAGGAATTGTTGAACTCATCTCCCGGTATGGCATACAGAAACTTGTAATGGGAGCAGCATCTGATAAGTACCATTCAAGGAGGATGACATCCCTCAGATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCTTGTCATATACAGTTTATCTGCAACGGCTACCTCATACATACAAGGGATTGCAGTTTGAATAGAGGGAATGTAGAGGTTGAATTTCCTTTGTTGCAGCAAATGGCAAACTCTGAAGTTGGACATTCACCTAACTTGAGTTTCCAATCAATTTTGCAAGGGCAAAACCATGGGATAAAATTAACTAATCCAGCTCAAGAGTTATTTCGTAGAGTAAGGTCTGTTAATGATGGACATATGAGAAGCCTTGAATCTGTTTCTTCTTCAGAAGGGTTTTTAACTCCACCAAGCAAGTTCAGTAAAAACATAAGTTCTATTGAACCAGGATTGACCCCAAATTTGATTAATGATGGAAGTGAGAATGCATTAGACTTGATTTTGAATGACCCTTCTCTGATTAACAAGGATCTTCATCATTCATCATCTCCTAGTGTACTGGATGAAGGAATGGATGATGCTCTCTATCATCAACTTGAACAAGTAATGGCTGAGGCTTCGAATGCTAGGCGTGATGCATATCAAGAAACTGTTAGGCGCGGTAAAGCTGAAAAAGATGCTATTGATGCTATTCACAGGGCTAAAGCCACTGAAAACTTGTACAAAGAAGAGCTGAAACTAAGGAAAGAACAAGAAGAAGCAGTAGAAAAAGCAAATGAAAAACTTAACAATATGAAGAGCCAGACAGACAAAGTTAATGAGGAACTCCGACTTGCCTTAGATCAGAACTCATCACTAGAGAATCAAATTGCATCAACTGAACTTATGGTAAAGGAGTTGAAGCAAAAGATTATATTTTCCTTGGACCTGTTACAAAACTACAAGGATGAGCTAGATGATTTGCAAATACAGCGTGATAATGCAGTGGGAGAGGCTGAGGAGTTTAGGAGAAAACAAGGGGAAGCCTCATCAAGCACACAGGAGCTTCACTGCTTCTCAGATTTTTCCTTTCAAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCAAGAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGCGTCACACTGAGGTGGCTATAAAAATGTTGAATCCTGACAGCACGCAAGGACCTTTGGAGTTTCAACAGGAGGTTGAAGTATTGAGCAAGTTAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCACAGAATCTTGGACTCTTGTGTATGAGTATTTACCTAATGGAAGCCTTGAAGATCGTCTCAACCGCAAGGATAACACACCTCCACTATCATGGCAAACTCGAATTTGCATTGCTGCAGAACTTTGTTCTGCTCTCAATTTTCTTCACTCCAATAAACCTCACAGCATAGCGCATGGCGACTTAAAACCCGCCAACATTCTCCTCGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGCCGTATATTATCTTGTCAAGACAGTTCCAGTAATAGTACTACACAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTGCTTCTGGTGAACTTACACCAAAGTCAGATGTTTATTCATTTGGAATCATTTTATTGAGATTGATGACTGGGAAACCAGCCCTGGGAATAATAAAGGAAGTGCAATATGCATTAGATGCTGGAAAGTTGAAATCCATCTTGGATCCTTTGGCTGGAGAATGGCCATTTATGCTGGCTGAAGAGCTGATTCGCTTGGCTTTGAGGTGTTGCGAGATGAATCGGAAGAACCGGCCAGAACTTTATTCAGATGTTTGGAGGATACTGGAACCAATGAGGGCTTCTTCAGTAGTCACAAACACCTCTCAACTGGGTTCTCAAAGGCTATGCCAACCTCCTCCTTATTTTATTTGTCCAATCTTTCTGGAAGTCATGCAAGATCCACATGTAGCTTCGGATGGTTTTACTTATGAAGCTGAGGCTATACGCGAATGGCTGGAAAGTGGTCGTGACACTTCACCAAGGACAAATTCCAAGCTTGCTCATCACAATCTTGTTCCCAACCACGCTCTTCGCCATGCGATCCAGAACTGGCTTCAAAGTCAATGA	2634	0.415	MAVVSPMPATPPQVNPVNLLRNTGVPGIMTSRREIVNEPSPSMVNETIYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLALMGAKFPASALREEGVQDYHERERLKMHKTLDAYLFICQRMGVRARKLLHIEMDCIEKGIVELISRYGIQKLVMGAASDKYHSRRMTSLRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLNRGNVEVEFPLLQQMANSEVGHSPNLSFQSILQGQNHGIKLTNPAQELFRRVRSVNDGHMRSLESVSSSEGFLTPPSKFSKNISSIEPGLTPNLINDGSENALDLILNDPSLINKDLHHSSSPSVLDEGMDDALYHQLEQVMAEASNARRDAYQETVRRGKAEKDAIDAIHRAKATENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALDQNSSLENQIASTELMVKELKQKIIFSLDLLQNYKDELDDLQIQRDNAVGEAEEFRRKQGEASSSTQELHCFSDFSFQEIKEATSNFNPSKKIGEGGYGSIFKGVLRHTEVAIKMLNPDSTQGPLEFQQEVEVLSKLRHPNLITLIGACTESWTLVYEYLPNGSLEDRLNRKDNTPPLSWQTRICIAAELCSALNFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILSCQDSSSNSTTQFWRTVPKGTFVYVDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPLAGEWPFMLAEELIRLALRCCEMNRKNRPELYSDVWRILEPMRASSVVTNTSQLGSQRLCQPPPYFICPIFLEVMQDPHVASDGFTYEAEAIREWLESGRDTSPRTNSKLAHHNLVPNHALRHAIQNWLQSQ*	878

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0078	877	Pfam	Protein kinase domain	521	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0078	877	Gene3D	Transferase(Phosphotransferase) domain 1	592	803	-	-
	Gso3g0078	877	CDD	STK_N	47	203	-	-
	Gso3g0078	877	ProSitePatterns	Protein kinases ATP-binding region signature.	525	546	IPR017441	GO:0005524
	Gso3g0078	877	ProSiteProfiles	Protein kinase domain profile.	519	788	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0078	877	PANTHER	OS02G0152300 PROTEIN	14	876	-	-
	Gso3g0078	877	Coils	Coil	348	368	-	-
	Gso3g0078	877	Pfam	U-box domain	808	876	IPR003613	GO:0004842\|GO:0016567
	Gso3g0078	877	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Gso3g0078	877	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	806	877	IPR013083	-
	Gso3g0078	877	Coils	Coil	385	490	-	-
	Gso3g0078	877	SUPERFAMILY	Protein kinase-like (PK-like)	495	785	IPR011009	-
	Gso3g0078	877	SMART	serkin_6	519	787	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0078	877	Gene3D	Phosphorylase Kinase; domain 1	489	591	-	-
	Gso3g0078	877	SMART	Ubox_2	810	873	IPR003613	GO:0004842\|GO:0016567
	Gso3g0078	877	SUPERFAMILY	RING/U-box	801	875	-	-
	Gso3g0078	877	CDD	RING-Ubox_WDSUB1_like	811	852	-	-
	Gso3g0078	877	PANTHER	U-BOX KINASE FAMILY PROTEIN	14	876	-	-
	Gso3g0078	877	ProSiteProfiles	U-box domain profile.	806	877	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0078	Gso-Chr3	846854	853280	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0078	1	875	U-box Gene Family	AT2G45910	51.239	0.0	863

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Gso3g0078		Pkinase	8.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0078	-		-	gmx:100780079	1713.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0612	7	6501280	6509431	Gso3g0078	3	846854	853280	GST
	Gso18g1968	18	52199213	52206673	Gso3g0078	3	846854	853280	PCT
	Gso9g2136	9	45646645	45654556	Gso3g0078	3	846854	853280	PCT
	Gso3g0078	3	846854	853280	Gso18g1968	18	52199213	52206673	PCT
	Gso3g0078	3	846854	853280	Gso9g2136	9	45646645	45654556	PCT