Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0066 ATGAGTTCTTCACAGCACTTGAACAATGTTGGTGAAGATAGCAGCAGTAGAGACATGAGTTTCTTCCCTCCTTCTTCTCTTTATGTGGGTTCCTCACAAACACAGACTCCTCCTTTGTCTCTGAGTCATGGAAATGGGGTAGAGGGTTCAAATTCAAACCCTGAGATGGGTCTTCTGATTTTTGCGTCCACAGTGTTTCAGCAGCCCCAGGAGTGCAGGGGAACAAAGAGAGCCATTGATGAAGAAGAAGAAGAAGAAGAAGAAGACGAGGAAGAAGAAGAAGGGGTTGATGAGATAGAGAACAACAAGAACTTGTGTTTGAAACTTGGTGGTGATGAAGCACAAGCTGCTAAGAGCTCTGCTTCAGGGAAAACCAAGCTTTGTGCAAGAGGTCACTGGAGGCCAGCTGAAGATGAAAAACTCAAGGAGCTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCTGAGAATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCCAGGATAAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCTAGGCTCTTCCCTGGAAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCACTCTAGTCGTGTGTACAGAAGGAGGAAACTGGTTGTTAATGAAACCGTTCTTCCAAAGGGTTTGAATCTGACTCTGTCTAATAACAATGCAGGGAGTGAGTCAACCATCTCAAGCACCATTGACGAATCTGCCTCAACTTGTACTAACCTCTCCCTCACACCACCCTCTTCAGCCAAAGTAACTCCTCCTTTTGGAAGACTCTTTGACCATCATGGTCCATCTCAGAATCATCACCAAGCCTTTGGATCATTAATTGGACAAGCTATAGGGGATGTGAGTTTTAACAAGAAGTTTTGTGGTGCTTCTTGGAACGGGGTAGCATATAAAAAGGCTGAACAAGTGGGAAAGCTTAAGGGTGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTCAATTTCTGAAGAGAGTGAAACTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACCTAG 1218 0.4401 MSSSQHLNNVGEDSSSRDMSFFPPSSLYVGSSQTQTPPLSLSHGNGVEGSNSNPEMGLLIFASTVFQQPQECRGTKRAIDEEEEEEEEDEEEEEGVDEIENNKNLCLKLGGDEAQAAKSSASGKTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREHSSRVYRRRKLVVNETVLPKGLNLTLSNNNAGSESTISSTIDESASTCTNLSLTPPSSAKVTPPFGRLFDHHGPSQNHHQAFGSLIGQAIGDVSFNKKFCGASWNGVAYKKAEQVGKLKGVDQSNFSDANSEVSVSESVATNRSNVSISEESETVGDKINMPFIDFLGVGAT* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0066 405 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Gso3g0066 405 Coils Coil 72 102 - -
Gso3g0066 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Gso3g0066 405 MobiDBLite consensus disorder prediction 71 99 - -
Gso3g0066 405 MobiDBLite consensus disorder prediction 81 98 - -
Gso3g0066 405 PANTHER OS08G0435700 PROTEIN 79 405 - -
Gso3g0066 405 Gene3D - 130 181 - -
Gso3g0066 405 Gene3D - 184 243 - -
Gso3g0066 405 PANTHER MYB PROTEIN-RELATED 79 405 - -
Gso3g0066 405 Pfam Myb-like DNA-binding domain 133 193 - -
Gso3g0066 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Gso3g0066 405 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Gso3g0066 405 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Gso3g0066 405 CDD SANT 133 174 IPR001005 -
Gso3g0066 405 CDD SANT 193 224 IPR001005 -
Gso3g0066 405 MobiDBLite consensus disorder prediction 1 54 - -
Gso3g0066 405 SMART sant 181 229 IPR001005 -
Gso3g0066 405 SMART sant 129 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0066 Gso-Chr3 699564 702447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0066 127 252 MYB Transcription Factor Family AT1G26780 80.159 1.20e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g0066 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0066 K09422 - gmx:100776882 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0066 3 699564 702447 Gso3g0066 3 699564 702447 ECH