Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0055 ATGGGAAGCAGAAAGGAGGAAGAGAGGAACGAAAAAATCATCAGAGGTCTCATGAAGCTTCCTCCCAATCGAAGATGCATCAACTGTAATAGTCTGGGTCCACAATATGTTTGTGCGAATTTCTGGACCTTTGTTTGCATGACCTGCAGTGGTATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAATGTTCACGTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATACATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAGTAAGAGAGTTTATAAGGAATGTATATGTGGATCAAAGATATGCAGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTATTGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCTGATAAAGTTTGCTATGAAAGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGGTTCAGCGATCATGCGTATGATGACAGATTTGCAAATGAGAGATCTGGTCCAAGAATCTCCGACTTTTCTATGTCTAATGGTGGTGAGCAATTTAAAACTGATTTTCAGCATTCTGGTACCTGTTCAAGTAAAGATGTATTGCCTCATGTAACAAATACATCTCTGGAAACAAACTCCAAAAGAGATGCAGATGGAATTCATCGTCCACAGAGAACTACCTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCAGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTTTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCCTCTCAGGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTGCATCTTTCAATGAGCGTCAACCTTTGAAAACATCACAATCCTCATCTGTTGACTTTATGGACCTTTCTCAGCAGCCATCTGCTGCAACCTCAAGTGAGAAGTCACTGGAGTTGTCTGTCCCAGAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCACACATCTACTGCACAAGTAGAAATTCAACCAGCAGTACAGGAAAAATTTGATCCATTTTTGAACTTAAATGCAAATACGCTATGGCCATGTTTTGAAACTTCTAGTGCTAGCGCTCTTTCTTCAGTTACATCTAATTTATGGCGTGATGTCACATGGACCAGAGAAGAACAAGTTTCTGTTATGGCATCAAACTCTCAATCATGGAGTGCATTTAAGGATCCTGCTAACTCTGTTCCTGTGGATGCTCTTATTACTCAAGGATCACAAATGCATGATCTTCCGTCAACTGATGATCAGTTTTTGGATTTAAGAGCTTCTGAGGGATCCAATAAAGATGGTATGCACCGCATTGACCCTGTTGCTGGGTTTGATCATGATCTTTCATCGCATTTTGTTAGTGGCTCACCATGTCCTCCATCTGCATTTCCTCCAATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTTTGATTCAGATGTAGAACATAATAATACGTGTCAATTGCAATTCCTTGACGTCAGCTCTCTACAAGCAGCTCTGCCAGATTCCCAGCTAACACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAACCCTTATTTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAACATCCAGACGAATGAACCGGTTGCTTCTGTTGGGGGTAATCCCTTTGCATAG 2031 0.4195 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCANFWTFVCMTCSGIHREFTHRVKSVSMAMFTSQEVDALQNGGNQRAREIHLKNWDFQRQRLPDSSNVDKVREFIRNVYVDQRYAAAKSSDKPPRDVQSPIEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVCYERKISSIIFSPGRFSDHAYDDRFANERSGPRISDFSMSNGGEQFKTDFQHSGTCSSKDVLPHVTNTSLETNSKRDADGIHRPQRTTSLGSTDSNLSSLRSYSSGGLVDFFSEPFQASGPHQNKVSCTPQPSDLGSTVSSDLSEAPVAPKPFSSSASSIDLFQLPAAPSQASSVDLFQSSALSAIASFNERQPLKTSQSSSVDFMDLSQQPSAATSSEKSLELSVPENEGWATFDMPQHTSTAQVEIQPAVQEKFDPFLNLNANTLWPCFETSSASALSSVTSNLWRDVTWTREEQVSVMASNSQSWSAFKDPANSVPVDALITQGSQMHDLPSTDDQFLDLRASEGSNKDGMHRIDPVAGFDHDLSSHFVSGSPCPPSAFPPMGEVQPNEINHKSTNPFDYPFDSDVEHNNTCQLQFLDVSSLQAALPDSQLTPTFQSGIAEPWLPQNTLNPYFSSAGQGGLTFMAAPPPSSQILNIQTNEPVASVGGNPFA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0055 676 MobiDBLite consensus disorder prediction 302 326 - -
Gso3g0055 676 MobiDBLite consensus disorder prediction 132 146 - -
Gso3g0055 676 MobiDBLite consensus disorder prediction 302 333 - -
Gso3g0055 676 MobiDBLite consensus disorder prediction 215 256 - -
Gso3g0055 676 MobiDBLite consensus disorder prediction 212 278 - -
Gso3g0055 676 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Gso3g0055 676 MobiDBLite consensus disorder prediction 123 159 - -
Gso3g0055 676 Pfam Putative GTPase activating protein for Arf 12 124 IPR001164 GO:0005096
Gso3g0055 676 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Gso3g0055 676 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gso3g0055 676 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 676 - -
Gso3g0055 676 CDD ArfGap_AGFG 11 123 - -
Gso3g0055 676 MobiDBLite consensus disorder prediction 380 404 - -
Gso3g0055 676 PANTHER ARFGAP/RECO-RELATED 1 676 IPR044820 GO:0005096
Gso3g0055 676 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Gso3g0055 676 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gso3g0055 676 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gso3g0055 676 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0055 Gso-Chr3 566486 576621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0055 14 121 C2H2 Transcription Factor Family AT4G05330 33.613 8.66e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0055 K15044 - gmx:100817495 1336.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0055 3 566486 576621 Gso3g0055 3 566486 576621 ECH