Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0034 ATGGTGCCGCATAAATCTCAAGGTGGTGTGGAGCAGCTTGCAAATGCTGGGGTTTTGGGAGGATCTGCTGTAAAAATTGCCGCTGCACCTGCTGGGGGAAGTGGGAAGCAGCGTTTGAGGTGGACATCTGATCTTCATGACCGTTTTGTCGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGACTCTAAAGTTGAGAAGAGGAATTCTGGAGACAGCATTTCTGGCGCAGATTCTTCCCCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTAACTTGACAACCTCGGAAGCACTTCCCTTGTCCCATGATGAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGAGGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATTGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCAAGTAAGAAATGCTGCACAAAAGAATGACTGCAATGTTGGTCAGTTGGATCCAAACTTGTATGATGATGCTGGGTTTGAATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAA 798 0.4436 MVPHKSQGGVEQLANAGVLGGSAVKIAAAPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKVEKRNSGDSISGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSNLTTSEALPLSHDEQNHPQSEASGSSEALASTVSPLKKQRIDDGSKDGFTASQVRNAAQKNDCNVGQLDPNLYDDAGFEFDLETKKDEDNESGQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0034 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Gso3g0034 265 SUPERFAMILY Homeodomain-like 35 90 IPR009057 -
Gso3g0034 265 MobiDBLite consensus disorder prediction 97 124 - -
Gso3g0034 265 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 258 IPR044848 GO:0003700
Gso3g0034 265 MobiDBLite consensus disorder prediction 220 237 - -
Gso3g0034 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Gso3g0034 265 Pfam MYB-CC type transfactor, LHEQLE motif 122 168 IPR025756 -
Gso3g0034 265 MobiDBLite consensus disorder prediction 182 239 - -
Gso3g0034 265 Gene3D - 35 94 - -
Gso3g0034 265 MobiDBLite consensus disorder prediction 182 204 - -
Gso3g0034 265 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Gso3g0034 265 Coils Coil 125 145 - -
Gso3g0034 265 PANTHER OS05G0491500 PROTEIN 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0034 Gso-Chr3 321547 325800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0034 33 166 G2-like Transcription Factor Family AT4G28610 58.955 1.39e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g0034 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0034 - - gmx:100787389 520.776