Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0030 ATGCAGAAATTGCGAATGGCCACTTCACCATTATCACAACTACTACTATCTCTGATTCTCCTCCAGAATTTTCACCATTCACATTCCTTCTCCCTCTCCGTTGAGAACCACAATGAAGACGTCATAGTTTCATCACCCAATGCCACATTCACCGCAGGTTTTTACCCCGTCGGTGAAAACGCTTTCTGCTTCGCAATATGGTACACCCGGCCACCTCGTACCGTCGTTTGGATGGCCAACCGGGACCAGCCGGTAAACGGAAAACGCTCCACGCTCTCCCTTCTCGGAACCGGTAACCTCGAACTAACCGATGCCGGTCAGTTCATCGTGTGGTCCACAAACACCGCCACCCCATCGAAACAAAACCCCCGGTTACATTTGTACGACACCGGCAACCTCGTACTAATAGCAATCCTCGACAACTCCGAAGATCATGTTTTGTGGCAAAGCTTCGATTTTCCGACGGACACGCTTCTTCCTAACCAACCTCTGAGCAAGAGCACCAACCTCGTTTCATCGAGAAGTGGGACCAACTATTCCTCCGGTCACTACAAGCTCTTCTTCGACTTCGAGAATGTTCTGCGTCTCATGTACCAGGGTCCTCGAGTTTCGAGTGTTTACTGGCCTTACGCTTGGCTTCAGAGCAATAACTTCGGTAATGGGAATGGTAGATCCACTTTCAATGATAGCAGGGTTGTTGTGCTGGACGATTTCGGCAAACTGGTTTCTTCTGATAACTTCACTTTCACTACAATTGATAGCGGAACGGTGGTGCTTCGACGAAGATTGACCCTCGATCACGACGGAAATGCGAGGGTGTATAGCATCAGAGACGGAGAAGATAATTGGAAGGTGACGGGAATATTCCGGCCACAGCCTTGTTTTATTCACGGGATTTGTGGACCCAATAGTTATTGCAGTAATAAACCAACTACTGGAAGAACGTGTTCCTGCCTTCCAGGATATAGATGGGTTGATAGTCAAGACTGGTCTCAAGGTTGTGAATCAAGTTTCCAGCTTTGGTGCAACAACACTGAGAAAGAGTCTCACTTCCTACGCTTACCTGAATTTGATTTTTACGGATACGACTATGGCTATTATCCAAACCACACGTACGAACAATGTGTGAATCTGTGCTTGGAGTTGTGCGAATGCAAAGGGTTTCAACACAGCTTCTCAGAGAAAAGTGACTCTACTAGTCAGTGCTACCTGAAGACACAGTTGCTAAATGGCCATCATTCACCTGGTTTTAAGGGATCATTCAGCCTGCGACTTCCTTTGTCTCATGACTATGATGAGAAGGCCATCCTAAATAATGACAATGGCTTGGTTTGTGAGGGAAATAGTGGAGGAGCGAAAGAACTAGAGAGACCGTATGTGGAAGAAAAAGAAAATGGATCGGTGAAGTTCATGCTGTGGTTTGCAACTGCCTTGGGAGGAATTGAGATCGTGTGCTTCTTTTTGGTGTGGTGTTTCTTGTTTAGGAATAATGCTGACAAACAAGCCTATGTTCTTGCAGCTGAAACAGGGTTTAGGAAATTCAGTTATTCTGAACTGAAACAAGCCACCAAAGGTTTCTCTCAAGAGATTGGAAGGGGTGCTGGAGGTATTGTGTATAAGGGTGTCTTGTCTGACGATCAAGTTGTGGCGATAAAGCGACTACATGAAGTTGTGAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGCATAATTGGAAGGCTTAATCACATGAACTTAATTGGCATGTTGGGGTATTGTGCAGAGGGAAAGTATAGATTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCAGAACCTTTCATCGAGTTCAAATGTACTTGACTGGAATAAGAGGTATAACATTGCTCTGGGAACAGCAAGGGGTCTGGCTTACTTGCATGAAGAATGCTTGGAATGGGTTTTGCATTGTGATATTAAGCCACAAAATATACTTCTGGACTCTGATTACCAACCCAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTTAACCGGAACAACCTCGACAATTCAACCTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTTTACAGCTATGGAATTGTTGTGTTGGAGATGATAACAGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGAATTAGAAGCAAAGTCGCCTCATCATGGGAGGTTGGTGACATGGGTGAGGGAGAAAAGGAAGAAAGGATCAGAAATGGGATCATCTTGGGTGGATCAAATCGTTGACCCTGCTTTGGGATCAGACTATGACATGAATAAGATGGAGATGTTGGCAACGATGGCTTTGGAATGTGTAGAGGAAGAGAAAGACGTGAGACCTAGCATGAGTCATGTTGCTGAGAGGCTCCAAAGTCATGAACATGATTCTTGA 2445 0.4524 MQKLRMATSPLSQLLLSLILLQNFHHSHSFSLSVENHNEDVIVSSPNATFTAGFYPVGENAFCFAIWYTRPPRTVVWMANRDQPVNGKRSTLSLLGTGNLELTDAGQFIVWSTNTATPSKQNPRLHLYDTGNLVLIAILDNSEDHVLWQSFDFPTDTLLPNQPLSKSTNLVSSRSGTNYSSGHYKLFFDFENVLRLMYQGPRVSSVYWPYAWLQSNNFGNGNGRSTFNDSRVVVLDDFGKLVSSDNFTFTTIDSGTVVLRRRLTLDHDGNARVYSIRDGEDNWKVTGIFRPQPCFIHGICGPNSYCSNKPTTGRTCSCLPGYRWVDSQDWSQGCESSFQLWCNNTEKESHFLRLPEFDFYGYDYGYYPNHTYEQCVNLCLELCECKGFQHSFSEKSDSTSQCYLKTQLLNGHHSPGFKGSFSLRLPLSHDYDEKAILNNDNGLVCEGNSGGAKELERPYVEEKENGSVKFMLWFATALGGIEIVCFFLVWCFLFRNNADKQAYVLAAETGFRKFSYSELKQATKGFSQEIGRGAGGIVYKGVLSDDQVVAIKRLHEVVNQGESEFLAEVSIIGRLNHMNLIGMLGYCAEGKYRLLVYEYMENGSLAQNLSSSSNVLDWNKRYNIALGTARGLAYLHEECLEWVLHCDIKPQNILLDSDYQPKVADFGLSKLLNRNNLDNSTFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGVQITELEAKSPHHGRLVTWVREKRKKGSEMGSSWVDQIVDPALGSDYDMNKMEMLATMALECVEEEKDVRPSMSHVAERLQSHEHDS* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0030 814 Pfam D-mannose binding lectin 74 168 IPR001480 -
Gso3g0030 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Gso3g0030 814 Pfam S-locus glycoprotein domain 246 323 IPR000858 GO:0048544
Gso3g0030 814 SMART blect_4 33 154 IPR001480 -
Gso3g0030 814 SUPERFAMILY Protein kinase-like (PK-like) 506 807 IPR011009 -
Gso3g0030 814 Gene3D Hepatocyte Growth Factor 353 422 - -
Gso3g0030 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 209 IPR036426 -
Gso3g0030 814 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Gso3g0030 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 814 - -
Gso3g0030 814 ProSiteProfiles PAN/Apple domain profile. 342 436 IPR003609 -
Gso3g0030 814 SMART serkin_6 524 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0030 814 Gene3D Transferase(Phosphotransferase) domain 1 600 814 - -
Gso3g0030 814 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 10 814 - -
Gso3g0030 814 ProSiteProfiles Protein kinase domain profile. 524 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0030 814 CDD B_lectin 44 154 IPR001480 -
Gso3g0030 814 Pfam Protein kinase domain 527 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0030 814 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Gso3g0030 814 CDD STKc_IRAK 530 808 - -
Gso3g0030 814 Gene3D Phosphorylase Kinase; domain 1 491 599 - -
Gso3g0030 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Gso3g0030 814 Gene3D - 33 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0030 Gso-Chr3 271721 275144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0030 514 811 Trihelix Transcription Factor Family AT5G38560 42.525 3.94e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso3g0030 Pkinase 6.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0030 - - gmx:100808408 1665.2