Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0023 ATGGCTTCTCTGCTCCTCCCTCCAACTGCTACTTCTTCCACACTTAAACACAACAACCAAATCCTGAAACTGAAACCAAACAATAATGCTCATGCTACATGTAACGTCTTCTTATCAAACTCAAACCACTACCGTTTCAACTCTGCAAAGTGCCATGCATTGTTCGATGACGTGGCCAAAGGGTTGTTGGAGAGCAGCAGTGTCGGGGTGGACCAGTTCCAGAGAGTGACAGAAGGCTTATCCGACATGCAGAGGTGGGTGTTCCTTGTCTTTGGTGGGTTGACGTGGATTTACCTGACTGCAAGACCAGGTGTTCTTGTCGGTGCCATTGATGCGTACCTTTTGGCACCTCTTCAACTGGGTTTGGACAACTTGTCTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGACAAGCTCGGTGAAGGGTCCTTTGGTGTTGTCTATTCGGGTGTTTTGCTTCCAAAGAATGTGGATGTGGATGTGCTGCAGAAGAGGGGGAGAGCCAAGACAACTCAGCTTGATGCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGGGCAGCACCCGAAACATGTGCTGACTTCCTTGGAACTTTTGTAGCTGATCAAACTAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGAAACGAAATGCATTGATCATCAAACAAATAATGCGCCAGATCATTACGTCTCTTAGGAAAATTCACGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGAGGATTGGAAAGAATTATGTTCCAAATCGTACCCTTTTGGATCCTGACTACTGTCCCCCAGAATTATATGTACTTCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCACCAGTTCTGTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTACTGCAAATGGCAATACCAAGCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAACATGTGGATATGATATGAAAAAATGGAGGGACTACACTCGCCTCCGGCCTGACTTGCAAATTCTAGATAGTGAATCCAGTAGAGGGTGGGATTTAGCAACAAAGCTTGTATCTGAAAGAGGTTCCCTAAGAAGAGGACGCTTATCTGCTGCTGCTGCTCTGCGACATCCTTATTTTCTTCTGGGTGGTGATCAAGCAGCTGCAGTCCTTTCAAAATTAAACTTGAACAGAAAGTGA 1494 0.4438 MASLLLPPTATSSTLKHNNQILKLKPNNNAHATCNVFLSNSNHYRFNSAKCHALFDDVAKGLLESSSVGVDQFQRVTEGLSDMQRWVFLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLSGRRNLKRSDFVVGDKLGEGSFGVVYSGVLLPKNVDVDVLQKRGRAKTTQLDAKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCADFLGTFVADQTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPVLWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLELKTCGYDMKKWRDYTRLRPDLQILDSESSRGWDLATKLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLNLNRK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0023 497 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 495 - -
Gso3g0023 497 Gene3D Transferase(Phosphotransferase) domain 1 276 480 - -
Gso3g0023 497 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 495 IPR044803 GO:0004674|GO:0009579
Gso3g0023 497 SMART serkin_6 136 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0023 497 Gene3D Phosphorylase Kinase; domain 1 124 245 - -
Gso3g0023 497 SUPERFAMILY Protein kinase-like (PK-like) 132 479 IPR011009 -
Gso3g0023 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Gso3g0023 497 Pfam Protein kinase domain 285 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0023 497 ProSiteProfiles Protein kinase domain profile. 136 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0023 Gso-Chr3 218342 221752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0023 136 334 MAP Kinase Kinase Kinase AT3G13530 25.248 1.31e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gso3g0023 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0023 - - gmx:100786843 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0023 3 218342 221752 Gso18g1748 18 49864508 49868616 PCT