Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0004 ATGGGTGCTAGGCGTCCTGGCTTTGCACCATTTGCAGGTGCTCGCATACACCTGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTTCCTGGTGATGATGTTGCTTTACTGGTTGACCATCATACTGATATGCACTTGGACACTGAAGATATGTCTTATGAGGAGCTTCTTGAATTAGGTGAGCAGATTGGCAATGCAAAATCGGGTTTATCAGAGAAAACAATTACTAGTCAAATGAAGACCAAAACTTATATACTACCTACTAATGCAACTAACTTGGAGGAGGCAGCTTATAAGGAACAGGAAACTGATCTCTGCATAATATGCCTGGAAGAATATAAGAACAAAGAGAATATTGGAATTCTTCGATGCGAGCACGAATATCACGCAGATTGTTTTAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGA 510 0.4078 MGARRPGFAPFAGARIHLSHRGNLHEMITLIHQNLPPAVFFPGDDVALLVDHHTDMHLDTEDMSYEELLELGEQIGNAKSGLSEKTITSQMKTKTYILPTNATNLEEAAYKEQETDLCIICLEEYKNKENIGILRCEHEYHADCFRRWLLEKNVCPMCKSVALTPGEKQ* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0004 169 SUPERFAMILY RING/U-box 109 163 - -
Gso3g0004 169 SMART ring_2 118 158 IPR001841 -
Gso3g0004 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 163 IPR013083 -
Gso3g0004 169 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Gso3g0004 169 Pfam Ring finger domain 117 159 IPR001841 -
Gso3g0004 169 PANTHER OS04G0185500 PROTEIN 35 164 - -
Gso3g0004 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 35 164 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0004 Gso-Chr3 47226 48205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0004 51 165 C3H Transcription Factor Family AT2G15530 43.966 8.04e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0004 K19041 - gmx:100775797 353.984