Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2645 ATGAAGAGGGAGTCTGATTGTGGCGAAGCGGGTTCTTCTTCTTGGTGTGTGGGAAAGAAGCAGAAGCAGAAGCGGTTAATGGAGGATGCAGGAGGGTGGAAGGGGAAGATATCATCATCATCGTCATCGTCGGAGCCACGTCCCTGTACCGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGCCACATGAGATGCCACCCGGAGCGTCACTGGAGAGGGATCAATCCTCCGCCAAATGTGATCAGGAGACAACAACAAATGACCCAGGAAGACCACGAGGTCGCTGCCTGTTTGCTCCTGCTTGCCAACGCCAAAGACAAAGACAAAGACAAAGAGGAAGATGTTCATTTCGAGTGCTCCAGTTGCAACAAGGTGTTTGGGTCCCACCAGGCTCTTGGAGGACACCGTGCCAGTCACAAGAACGTAAAGGGCTGTTTTGCCAATAATGCTGCCATAGGAACGTCGTCTAGTACTAGTGATCAGGAGAACATGATGATTCTTCATGGTCACAAGTGCAGCATTTGCCTCAGGGTTTTCTCTACTGGTCAGGCACTTGGTGGCCACAAGAGGTGTCACTGGGACAAAGGGGACAACCTCGGTCTCCTTGCAGACTCGTCATCCAAGTCTCTCTCTCTCGTCGACTTGAATTTCCCTCCCCCTTCCTTCTCCTCCCCCCTCGCTCTCGATTTGAGGTTGGGACTCTAG 714 0.5266 MKRESDCGEAGSSSWCVGKKQKQKRLMEDAGGWKGKISSSSSSSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNVIRRQQQMTQEDHEVAACLLLLANAKDKDKDKEEDVHFECSSCNKVFGSHQALGGHRASHKNVKGCFANNAAIGTSSSTSDQENMMILHGHKCSICLRVFSTGQALGGHKRCHWDKGDNLGLLADSSSKSLSLVDLNFPPPSFSSPLALDLRLGL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2645 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Gso2g2645 237 MobiDBLite consensus disorder prediction 1 48 - -
Gso2g2645 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 195 IPR013087 -
Gso2g2645 237 SMART c2h2final6 173 195 IPR013087 -
Gso2g2645 237 SMART c2h2final6 47 69 IPR013087 -
Gso2g2645 237 SMART c2h2final6 120 142 IPR013087 -
Gso2g2645 237 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Gso2g2645 237 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 38 237 - -
Gso2g2645 237 Pfam C2H2-type zinc finger 119 143 - -
Gso2g2645 237 Pfam C2H2-type zinc finger 48 71 - -
Gso2g2645 237 Pfam C2H2-type zinc finger 173 198 - -
Gso2g2645 237 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 38 237 - -
Gso2g2645 237 SUPERFAMILY beta-beta-alpha zinc fingers 46 142 IPR036236 -
Gso2g2645 237 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Gso2g2645 237 Gene3D Classic Zinc Finger 117 195 - -
Gso2g2645 237 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gso2g2645 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2645 Gso-Chr2 50608443 50609481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2645 47 237 C2H2 Transcription Factor Family AT4G35280 52.968 6.45e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g2645 zf-C2H2_6 4.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2645 - - gmx:100792631 448.743