Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2644 ATGGAGTATGGTGCGTTTGGGAGCTTGTCGGAGTGTGAAGAAGATTTGATCGAGGAGTTGCTGGAAAAAGGTTGCTGGGTGGAAACGAATGGGAGCAGCGAGGCACAGTACGACATAGAGCAAGAATTAGCCATGCCCATGGGGAAGACCACATGGTGGATTGGACCCAAGGGGCCTGTGTCTGGGTCATCTTCATCCGTGAAAGAGAGATTGGTGGTTGCGGTGGGCTACTTGAGAGAATACACAAAGAACAACAACGCCGCCAACGTGCTCATTCAGATATGGGTTCCCATACGGAGGATGACAGGCCTTCTTGCCATTGGCCTTGGGCCCGATGAGTCGGTTTCGGTTGCTTTTCCTTTTCCGACCAACATGAACATGAACATGAAGTCGAACGTAAACATTCGGTTCTTTAGAAGCCATGAGTACCCGCGAATTCCTTATGAATATGGATCCTTGGCACTTCCTGTCTTCGAAAGAGGCAGTGGCACATGCCTGGGTGTCCTCCAGATTGTAATGCCAGCAGCTCGCTGGGACACAATCAACTATCTCCCTCAACTTGACAACAATAATAATAATAATGCTTTCCAGGGCATGATTCCAGGTGGTGTTGTAAAGGTATTTGACGAGGATGAGGTGTACGAAGCATCAGTGAACGAGATGATGGAGGTGGTGAGGTGTGTGTGCAAGACGCAGAATGTGCCTTTGGCTCTGACATGGGCTCCTTGCGTCCAACAACTATGTGTGGATTGTGGGCATTCAAGGGATGAGAACAACTATGTGTCGATTGTGGACAGAGCGTGTTTTGTGGGGGATGGTCAGCCCCAGCTATTGGGGTTCCAGGAGGCCTGCTCTCAGCACCACCTTTTCCGCGGACAAGGAATTGTCGGTACGGCCTTCACAACTGCCAAGCCCTGTTTTGCTATGGACATAACCGCCTTCACCAAGGCCGAATATCCTCTCTCTCACCACGCCAACATCTTTGACTTGCATTCTGCCGTCGCTATTCCTCTAAGGACTTCTTCTTATCCCCATTTTGATTTTGTCTTGGAGTTCTTCCTTCCCAAACACTGCCCTGACCACAACCTCTTCCTCAACTCCTTATCTATTCTCCTTCAACAAGCTTGCCCCACCTTCCATCTTTCTGCTCCCATCCATGATGATGTATTTACCTCCTTGCCCTCTGAATCCCAGTCCCAGCAGGCTTCCTGGATCGCACATATGATTGATGCCCAATCCCAACACAAGGACAATGGGAAAGGTGTGTGCTTGTCCTTGGATTTCCTGGAAGAAGAACCCAAAGAGGAGTTCAAAGTCACAACAACTCACTGTAACTGGGACACCACTGCCACTAGTACTTATCATTCACACGACCATGTCGTGTTTTCAGATTTTGGAGAAGAATCTCAATCTCAATCTCAATCTCAAACTCACACATTTGGTGTGAAGCGTGGCAGAAAACCAGGAGAGAAGAGACGAACCAAGGCCGAGAAGACTATCAGCTTGCCAGTTCTAAGGCAATACTTTGCAGGAAGCCTAAAAGATGCGGCTAAGAGCATTGGCGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAACATGGCATAACGCGATGGCCTTCAAGGAAAATAAAGAAGGTGGGGCACTCTTTGAAGAAACTACAACTTGTAATTGATTCGGTACAGGGTGCCGAGGGTGCCATACAGATCGGATCCTTCTATAACAGTTTTCCGGAGTTGAGCTCTAGAGCTTCTCAATCATCCTCTCCTGCAGCACAAAGCCCTCCTCATGTTCCTCAACAACCCTTGAGAGTGAAGGCTACTTTTGCGGATGAAAAAATCCGTTTTAGCTTGCAACCACTTTGGGGGTTCACAGAATTGCAGTTGGAAATTTCAAGGCGCTTCAACCTAAGCGATGTTAGCAACGCCAACAACGTGGTTCTAAAGTATTTGGATGATGACGGAGAGTGGGTTGTTTTAGCCTGCGATGGCGATCTTGAGGAGTGTAAAGACTTGCATACAACGTCTCAGAGCCGCACAATTAGACTCGCCCTATTTCAAGCTTCTCCTCTTAATAATCAACCAAATTCATATACTTTCGCCAACACCACCAGCACTCCTTCTTCTTCTTAA 2133 0.4796 MEYGAFGSLSECEEDLIEELLEKGCWVETNGSSEAQYDIEQELAMPMGKTTWWIGPKGPVSGSSSSVKERLVVAVGYLREYTKNNNAANVLIQIWVPIRRMTGLLAIGLGPDESVSVAFPFPTNMNMNMKSNVNIRFFRSHEYPRIPYEYGSLALPVFERGSGTCLGVLQIVMPAARWDTINYLPQLDNNNNNNAFQGMIPGGVVKVFDEDEVYEASVNEMMEVVRCVCKTQNVPLALTWAPCVQQLCVDCGHSRDENNYVSIVDRACFVGDGQPQLLGFQEACSQHHLFRGQGIVGTAFTTAKPCFAMDITAFTKAEYPLSHHANIFDLHSAVAIPLRTSSYPHFDFVLEFFLPKHCPDHNLFLNSLSILLQQACPTFHLSAPIHDDVFTSLPSESQSQQASWIAHMIDAQSQHKDNGKGVCLSLDFLEEEPKEEFKVTTTHCNWDTTATSTYHSHDHVVFSDFGEESQSQSQSQTHTFGVKRGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSRASQSSSPAAQSPPHVPQQPLRVKATFADEKIRFSLQPLWGFTELQLEISRRFNLSDVSNANNVVLKYLDDDGEWVVLACDGDLEECKDLHTTSQSRTIRLALFQASPLNNQPNSYTFANTTSTPSSS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2644 710 ProSiteProfiles RWP-RK domain profile. 486 567 IPR003035 -
Gso2g2644 710 PANTHER PROTEIN NLP8 32 693 IPR045012 GO:0003700
Gso2g2644 710 MobiDBLite consensus disorder prediction 467 481 - -
Gso2g2644 710 Gene3D - 598 686 - -
Gso2g2644 710 ProSiteProfiles PB1 domain profile. 602 688 IPR000270 GO:0005515
Gso2g2644 710 Pfam RWP-RK domain 500 547 IPR003035 -
Gso2g2644 710 SMART PB1_new 602 688 IPR000270 GO:0005515
Gso2g2644 710 MobiDBLite consensus disorder prediction 467 496 - -
Gso2g2644 710 SUPERFAMILY CAD & PB1 domains 596 690 - -
Gso2g2644 710 PANTHER PROTEIN NLP2 32 693 - -
Gso2g2644 710 CDD PB1_NLP 603 687 IPR034891 -
Gso2g2644 710 Pfam PB1 domain 603 687 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2644 Gso-Chr2 50591745 50594677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2644 587 689 NLP Transcription Factor Family AT4G35270 48.214 3.40e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso2g2644 PB1 2.7e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2644 - - gmx:100792100 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0014 14 223681 226011 Gso2g2644 2 50591745 50594677 GST