Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2638 ATGTCACGAGTTGCAGTTGGCGGTTTTGCCAAAGCGTTTCCTTGGATGGAAAAGAGAGGTGTCAGTGCTGATGCTGAGCTCCAACTTGCTGATTTTGGGCCGGATCCTGCCCAGACATGTACTGGAAATGAAAAGGGTGACAAGGCCTTCCGGATTCCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCACGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTTGGTTTCACGATCAAGTCCTGGTTCCACAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAGGTTTACTTCCTCAGAGGAGCTTCAAGATAAATACCTGTTCCCAGGATATTGAAAGGACAGGTCTCATAGTTCCTAACACTCCCCCATCAGATGCTCCTTTGGATAAACCTTCCTCTTCTACTCATCTGTCTCTTAATAATAAGGTTATCTCCCCATCAACAAAAGTTTCACATTCATTACCAGTTACTCCATTTGCAACTTCGGCTGCAGAGAATGGACACGGAAGACATTTAGGATGTGATTCTGGTTTAAGTACAATGGAAGTTCATCAGCATATGATGCGATCATTTTCAGTCCCAGTTAATGGCAAATCCACTAATTTAAGGGTTACAGATTCTAGGGGCTTGATTCGTGTAATTTCGGCAAAACCACATCGTGAAACTGTTGGTGGAAAGTCAACTGACGGGGCTTTCGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTCTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTGAAACTCTTGCTAGGCAGGGATCAAATGTGTCACAACAGTCAGAAATAGTTTATTACAGCATTTTAATGCATGACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCGTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGATCTCATGCTCTTGCCATTTCATTACCATTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCATCAACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTCATCCTGTTATCTCATGTATTTTATACTATTCTCAATTTTAATGCAATTCTCTCCATTCTCCTTTCCTCATTCACTGGATTTGGGATTGCAGTCAGTATGAATTCTCTCATTATGGAATTCATTGGATGGAGAACTAGCAGGCGGGTTCAATCCTCCATTGAGAATGTTAACAGGACACAGCAGCAGCATCGTGAGCATGTGCAACAACAGGGACAGGAAGATGAAGGACAACATCACTTACAAAGACAACAAGAGCATCATCTGCCGCAGCATGGTAACAGTTGA 1572 0.4307 MSRVAVGGFAKAFPWMEKRGVSADAELQLADFGPDPAQTCTGNEKGDKAFRIPQSRRPNLSSLQIPARSLDIALSTFAKTDGPLVSRSSPGSTRGLPPRPNSAKVRSSMRGLLPQRSFKINTCSQDIERTGLIVPNTPPSDAPLDKPSSSTHLSLNNKVISPSTKVSHSLPVTPFATSAAENGHGRHLGCDSGLSTMEVHQHMMRSFSVPVNGKSTNLRVTDSRGLIRVISAKPHRETVGGKSTDGAFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPETLARQGSNVSQQSEIVYYSILMHDRIWQDVPVLILVSMLSYFCFLEQLLVSDLGSHALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILLSHVFYTILNFNAILSILLSSFTGFGIAVSMNSLIMEFIGWRTSRRVQSSIENVNRTQQQHREHVQQQGQEDEGQHHLQRQQEHHLPQHGNS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2638 523 MobiDBLite consensus disorder prediction 131 151 - -
Gso2g2638 523 ProSiteProfiles Zinc finger RING-CH-type profile. 260 322 IPR011016 GO:0008270
Gso2g2638 523 MobiDBLite consensus disorder prediction 485 523 - -
Gso2g2638 523 MobiDBLite consensus disorder prediction 81 96 - -
Gso2g2638 523 SMART ringv_2 267 316 IPR011016 GO:0008270
Gso2g2638 523 MobiDBLite consensus disorder prediction 81 108 - -
Gso2g2638 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
Gso2g2638 523 PANTHER OS02G0165000 PROTEIN 39 500 - -
Gso2g2638 523 CDD RING_CH-C4HC3_MARCH 268 316 - -
Gso2g2638 523 PANTHER OS02G0165000 PROTEIN 39 500 - -
Gso2g2638 523 SUPERFAMILY RING/U-box 264 319 - -
Gso2g2638 523 MobiDBLite consensus disorder prediction 496 515 - -
Gso2g2638 523 Pfam RING-variant domain 268 315 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2638 Gso-Chr2 50465976 50472737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2638 251 322 C3H Transcription Factor Family AT2G37950 45.205 2.58e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2638 - - gmx:100789461 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0023 14 305500 312455 Gso2g2638 2 50465976 50472737 GST
Gso20g0495 20 24658953 24672553 Gso2g2638 2 50465976 50472737 PCT
Gso2g2638 2 50465976 50472737 Gso20g0495 20 24658953 24672553 PCT