Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2599 ATGTCTGTGAATCGAAGGCTTCCTGCTTCAAATGGTAGATTGCTATCAAATATGAAGTCTTGGAAGCTGAATGAGCCTCTGCATGGGTCTAATTGTCCCAGGGCATGCAGGAGGAAGCCCTTGCTTCTTTGGTTTTTTGGCTTTGTTGCCATAGGGACTGTTTGGTTCATCTTGAGTTTCAATAGTAAGTATTTGATGAGCAAGGAGAATGAAGCAATTTGTGAAGAGAGAGAGAGAATCTTGCTACAACGTTACAATGTTAGTAGGAAACAGATTCATGCTTTGGCTTCCTTGCTCTCTGGATCAGATCAGATTTTATCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGCTAGGCAGCGGCATGGTTAGCACTCCACAGTTAATGTGTCCGGAGAATCAGGAGTTACAAAAGGAGCATACATGTGTTGTAGACACTGTAGAACCTATAGAACAATGCCCAATTCTTGATGATTATGTCCAGACAAGGCTCGAATTATCATTCCCATTGAAAAATTATGTATCATTGGCCTTGCGCTCTGCACTTTCAACTGATTTGGTTAGTTATTTGCACCGCGGAAAGAACACTGTGCAATCATGGGAACTGAGGGTATCTGCAATTCGGTATCATGTGAGTTCATCTAATTTAATTAAAGGATGCTGGTGGGTCATTGGAATTATAATGTCCTACTTCTGTTTACTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGGTGCACAACAAAAGCAGTTGAAACATTTTCCAAGGGGTCCTTCAAGGGGTACTGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATTATCGGGTCCTTTTGGTTATTTTGGCACCTGAATACGGGCATTATGCAGAGAAGAGAAGAAACACTAGCAAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTCCAAGATTGTATTCCTGAAAAATTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCATGAGAATATTTTGAGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACACCGGAGCAGCGTACCGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCCAGTAAACAAACCATTGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCAATCACAATGTATGGTACAGATGTTGCTGACACTGGCCTACTACACATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGGTGTTTGTTATTACTTTGCTTCTGGGTCATATTTTTTATGCAGCAATTAATAGAATAGCAAAAGTTGAGGCTGACTATCGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAGCTTGATGAAAACCAGATGGACTGTGCCCAAACCGCCCACAAGAGTGGTAAAGATCTTATCTCAGTCATAAGTGAGGTTCTCGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGCCTTTGATCCACGAGCTATTCTTGATGAAGTTTTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGAATAGAGCTGGCTGTTTATGCATCCAATCAAGTACCCAAAGTTGTCATTGGCGATCCTAAACGGTTCCGGCAAATAATTACTAATCTTGTTGGCAATTCACTTAAGTTTACTCATGATAAAGGGCATGTATTTGTCTCTGTTCATCTGGCGAGTGAAGTGAAAAACCCACTTCATATTATGGACGCAGTGCTGAGAGAAGGCTTAAACTTAAGCCAGGACATAACAAACAGAACATATGATACGTTAAGCGGGTTTCCTGTATGCAACAGATGGAAAAGTTGGGCCAATTTTACGAAGTTAAGTGGCACAAATGAGCCTGAAATTATTCAACTTCTAGTAATAGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGACAGTTCCACCTCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAGATGTCTAGTTGATCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCACGTCTCTGGATGCAATGCGGCAGAATAATCATTTTGGTTCAGAGTTCCAAGAATTGAGAACATTAGTGGTAGATAGAAGAAAAATCCGAGCTGAGGTCACAAAATATCATCTGCAGAGATTGGGAATGTCCGTGGATGTAACTTACAGTCTGAATTCTGCATGCTCTTGTCTATCTAATGTGTGTAACATGAGTATGTTGGCCATGATTCTTATTGACAAGGATGCTTGGGATAAAGAATATCATATCTTATACACAATCAAGAAACGTAGACAGAATGGCATCAAAGGGGATCCATTGAATTTACCAAAGATTTTTCTCCTAGCTACCCACCTTAGCTCCAATGAACAGGATGAGCTCAAGTCAGTTGGTGTCATAGATGATATATTAATGAAGCCTCTATGGTTTAGTTCTTTGATTCAGTGTTACAGAGAATCCCTTGGCACTGAAAACAAGCGAGTAAATAGGAAAAAAGTATCCAAACTCGGGAATTTATTAATTGACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTGTTCTACAGAAATATGGGGCTAAAGTGACTGCTGTGGAGAGTGGCAGGGCTGCTCTAAAGATGCTTGAGCTGCCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCGACGAGGAAAATCCGTTGTCTGGAGAGTGAGGTAAATGAGAAAATTGCATGTGGGCAAGCATCTGCAGAGATGTTTGGTAACATCTCTTATTGGCACATTCCGATACTAGCAATGACAGCAGATTCAACTCAGTCTTCCAATGAAGAGTGCATAAAGTGTGGAATGAATGACTATGTGTCAAAGCCGTTTGAAGAAGAGCAGCTCTACATGGCAATGGCACGTTTCTTCAAGTCAGATTCATAG 3666 0.4111 MSVNRRLPASNGRLLSNMKSWKLNEPLHGSNCPRACRRKPLLLWFFGFVAIGTVWFILSFNSKYLMSKENEAICEERERILLQRYNVSRKQIHALASLLSGSDQILSNCIDERRLQMLLGSGMVSTPQLMCPENQELQKEHTCVVDTVEPIEQCPILDDYVQTRLELSFPLKNYVSLALRSALSTDLVSYLHRGKNTVQSWELRVSAIRYHVSSSNLIKGCWWVIGIIMSYFCLLWRSQKQKLVQGHPGAQQKQLKHFPRGPSRGTGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMQRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPEKLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDHENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRTEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEADYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLASEVKNPLHIMDAVLREGLNLSQDITNRTYDTLSGFPVCNRWKSWANFTKLSGTNEPEIIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTSLDAMRQNNHFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMSVDVTYSLNSACSCLSNVCNMSMLAMILIDKDAWDKEYHILYTIKKRRQNGIKGDPLNLPKIFLLATHLSSNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRKKVSKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFMDLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQSSNEECIKCGMNDYVSKPFEEEQLYMAMARFFKSDS* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2599 1221 ProSiteProfiles Response regulatory domain profile. 1080 1217 IPR001789 GO:0000160
Gso2g2599 1221 Gene3D - 597 689 - -
Gso2g2599 1221 SMART HisKA_10 626 691 IPR003661 GO:0000155|GO:0007165
Gso2g2599 1221 Pfam His Kinase A (phospho-acceptor) domain 626 691 IPR003661 GO:0000155|GO:0007165
Gso2g2599 1221 SMART CHASE_2 341 540 IPR006189 -
Gso2g2599 1221 Pfam Response regulator receiver domain 1081 1212 IPR001789 GO:0000160
Gso2g2599 1221 CDD HATPase_EvgS-ArcB-TorS-like 743 902 - -
Gso2g2599 1221 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 681 902 IPR036890 -
Gso2g2599 1221 ProSiteProfiles CHASE domain profile. 341 565 IPR006189 -
Gso2g2599 1221 Gene3D - 690 908 IPR036890 -
Gso2g2599 1221 SUPERFAMILY CheY-like 1079 1217 IPR011006 -
Gso2g2599 1221 PRINTS Bacterial sensor protein C-terminal signature 832 846 IPR004358 GO:0016310|GO:0016772
Gso2g2599 1221 PRINTS Bacterial sensor protein C-terminal signature 850 860 IPR004358 GO:0016310|GO:0016772
Gso2g2599 1221 PRINTS Bacterial sensor protein C-terminal signature 867 885 IPR004358 GO:0016310|GO:0016772
Gso2g2599 1221 PRINTS Bacterial sensor protein C-terminal signature 891 904 IPR004358 GO:0016310|GO:0016772
Gso2g2599 1221 Pfam CHASE domain 344 538 IPR006189 -
Gso2g2599 1221 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 738 902 IPR003594 -
Gso2g2599 1221 ProSiteProfiles Response regulatory domain profile. 930 1057 IPR001789 GO:0000160
Gso2g2599 1221 ProSiteProfiles Histidine kinase domain profile. 633 907 IPR005467 -
Gso2g2599 1221 Gene3D - 63 102 - -
Gso2g2599 1221 Gene3D - 292 344 - -
Gso2g2599 1221 SMART HKATPase_4 738 907 IPR003594 -
Gso2g2599 1221 CDD HisKA 626 687 IPR003661 GO:0000155|GO:0007165
Gso2g2599 1221 PANTHER HISTIDINE KINASE 2 260 1218 - -
Gso2g2599 1221 PANTHER TWO-COMPONENT HISTIDINE KINASE 260 1218 - -
Gso2g2599 1221 SUPERFAMILY CheY-like 926 1057 IPR011006 -
Gso2g2599 1221 Gene3D - 1075 1220 - -
Gso2g2599 1221 Gene3D - 923 1062 - -
Gso2g2599 1221 CDD REC_hyHK_CKI1_RcsC-like 1081 1213 - -
Gso2g2599 1221 Coils Coil 603 623 - -
Gso2g2599 1221 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 612 692 IPR036097 GO:0000155|GO:0007165
Gso2g2599 1221 Gene3D CHASE domain 345 572 IPR042240 -
Gso2g2599 1221 SMART REC_2 1079 1213 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2599 Gso-Chr2 50205812 50217244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2599 37 160 Miscellaneous Gene Families AT5G35750 28.188 8.41e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso2g2599 CHASE 2.7e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2599 K14489 - gmx:100781655 2440.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0065 14 587888 599863 Gso2g2599 2 50205812 50217244 GST