Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2581 ATGCAATCTAAATCTGAAACTGCAAATCAACTGAGGTCTGATCCACATTCCTTTACACCTAACAATGCTTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATCCTGTCCCCCAAGCAATGTTAGGAGTGAATGCATCTAATTCATCTTCACTTGAACGCCCTAATGGTGATTCGGAATCCAGTGAAGAGGATGATGATGCCACTAAAGAATCACAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAGGACCACCAAGCGATGCAACATTCTTCATCATCTGCACCTTTGGGATACACTCCTTTTATAGGAATGCCCCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCCCGGCATCAGCATGCTATAAGAAGAGCACGAGGTAATGGAGGGCGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAACAAGGAAAAGGATATGGGTACTGGCCAGGTCCCATTGTCACGGTCAATTAGTTCATCTGGTTTTGGATCACTACCCTCTGACTCTGCTGAGACCTGGAATTCTCCTAGTGTGCAACAAGATGCAAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACGCAACTATGCAAATGTTTTGCAGTCATCATCTACTTTTTGTTTGCACTCGGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAACAACGGGGAAGCATCTTGTCAGAGCACACCTCACAGAGGCGTCTTGCTATTCAGTAA 867 0.4441 MQSKSETANQLRSDPHSFTPNNAYSEPWWRGIQYNPVPQAMLGVNASNSSSLERPNGDSESSEEDDDATKESQPTAPNQSGNYGQDHQAMQHSSSSAPLGYTPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASNHMNKEKDMGTGQVPLSRSISSSGFGSLPSDSAETWNSPSVQQDARGSQVHERFEERNYANVLQSSSTFCLHSGERVEEGDCSGQQRGSILSEHTSQRRLAIQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2581 288 MobiDBLite consensus disorder prediction 205 236 - -
Gso2g2581 288 MobiDBLite consensus disorder prediction 40 56 - -
Gso2g2581 288 MobiDBLite consensus disorder prediction 1 25 - -
Gso2g2581 288 PRINTS CCAAT-binding transcription factor subunit B signature 122 144 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 PRINTS CCAAT-binding transcription factor subunit B signature 153 176 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 ProSitePatterns NF-YA/HAP2 subunit signature. 124 144 IPR018362 GO:0003677|GO:0016602
Gso2g2581 288 MobiDBLite consensus disorder prediction 259 288 - -
Gso2g2581 288 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 98 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 97 279 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 97 279 - -
Gso2g2581 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 38 98 - -
Gso2g2581 288 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 121 176 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 MobiDBLite consensus disorder prediction 270 288 - -
Gso2g2581 288 MobiDBLite consensus disorder prediction 205 232 - -
Gso2g2581 288 ProSiteProfiles NF-YA/HAP2 family profile. 119 179 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 Gene3D - 119 181 - -
Gso2g2581 288 SMART cbf3 118 179 IPR001289 GO:0003700|GO:0006355
Gso2g2581 288 MobiDBLite consensus disorder prediction 72 97 - -
Gso2g2581 288 MobiDBLite consensus disorder prediction 40 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2581 Gso-Chr2 50047116 50050832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2581 98 288 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.592 2.35e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso2g2581 CBFB_NFYA 4.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2581 K08064 - gmx:102664020 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0089 14 808562 812370 Gso2g2581 2 50047116 50050832 GST
Gso18g0606 18 6594864 6598722 Gso2g2581 2 50047116 50050832 PCT
Gso8g2776 8 45516509 45520270 Gso2g2581 2 50047116 50050832 PCT
Gso2g2581 2 50047116 50050832 Gso18g0606 18 6594864 6598722 PCT
Gso2g2581 2 50047116 50050832 Gso8g2776 8 45516509 45520270 PCT