Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2579 ATGGCGCATAGGTTGCTCAGAGATCACGAAGCCGACGGTTGGGAACGCTCCGACTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCGGTTCAAGTTCGAGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGAGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACACGAGATGCCAGAAACTGGAGAATTGTCACAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCCCTGAAGCTACTTGGCAAGGCAGTGGAGATGAACACTCTGGAGGCTCCTGAAGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCGCATGGAGAAATTGAATCAATCAAAATGGTTCTCCAGCGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAAGCAGCAGGCTTCTGTGGCTCATAGTGGATTGTTGCCTCGGGCAGTGATATCACAGCAGCAGAACCAGGACCAAACACAAGGAATGCTTTATTATAACAATCCACCACCTCTTCAGCAGGAAAGAAGCTACTACCCGTCAATGGATCCTCAAAGAATGGGTGCTCTTGTTGCATCTGAAGATGATTCTCCTGGTGGGCCTTCTGTGTCAGGGGAGAACAAACCCAGTTTGGGGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCTAGCTGGCCAATACCATCATCAGTATTATCCTCTGTATGGTTATATGCCACCAGTTCCCCCTTATCAACAGCACCCACCTCCATACAATGCTGCGGTGGCTCCATCCCAGCCACCAGCTGTAAATCATCCTTATCAGCATTCTATGCAGCCAGGGTCTTCACAGACAGGCTCTGGACAGGCTGCACATGCCCCAGCTGAATCTGGAACATCAACATCAGGATCGCAGCAGCAATAA 1455 0.4667 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAVEMNTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQAKQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYPSMDPQRMGALVASEDDSPGGPSVSGENKPSLGKQQMQHYAHPMMPPLAGQYHHQYYPLYGYMPPVPPYQQHPPPYNAAVAPSQPPAVNHPYQHSMQPGSSQTGSGQAAHAPAESGTSTSGSQQQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2579 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 460 - -
Gso2g2579 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Gso2g2579 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 460 IPR039171 GO:0003723
Gso2g2579 484 MobiDBLite consensus disorder prediction 447 484 - -
Gso2g2579 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Gso2g2579 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Gso2g2579 484 Gene3D - 148 205 - -
Gso2g2579 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Gso2g2579 484 MobiDBLite consensus disorder prediction 432 484 - -
Gso2g2579 484 MobiDBLite consensus disorder prediction 334 397 - -
Gso2g2579 484 MobiDBLite consensus disorder prediction 334 360 - -
Gso2g2579 484 Pfam Torus domain 146 194 IPR032297 -
Gso2g2579 484 Gene3D - 211 310 IPR012677 -
Gso2g2579 484 CDD RRM_RBM22 227 300 - -
Gso2g2579 484 SUPERFAMILY RNA-binding domain, RBD 222 308 IPR035979 GO:0003676
Gso2g2579 484 MobiDBLite consensus disorder prediction 304 320 - -
Gso2g2579 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Gso2g2579 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Gso2g2579 484 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2579 Gso-Chr2 50033676 50037097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2579 210 289 Eukaryotic Initiation Factors Gene Family AT1G49760 32.941 3.36e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2579 K12872 - gmx:100778975 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0091 14 821478 825373 Gso2g2579 2 50033676 50037097 GST