Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2567 ATGAATTCTAGGTGCTTCCTTGTTCATCCACAACAAGAGTATAGCATGGTTCCATTTTCTTCAAATTCTGCCACAGAAGATAGAGTGGCTAGTGCTCGAAACAGGCCTCCGCGTGTCACCCCTCCTTCCTTTTTGGTTAGGATAGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTAAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAACCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGTTGGAGTTTATTGCCTTGATTCTCCAAATAACCATTACAACATTTACTTTGGCCATTTCCAAGAGGGAGAGACCTATTTGGCCTATGAGGATTTGGGTTTCTGGTTATGATATTGGCTGTGTTCTTAATCTGCTTCTACTTTATGGACGCTACCGTCAAATTTATCTAACTCAAGGAGATTCTCTCAGCCTTTCCGATATAGAGCAGCAGAGAAACAATGAAGAAACCAGGATGTCACACTTGATGAATAAATGCCGGACTTCGCTTGAGCTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCATCATGCTCCAAAGCTCCATGTGCTCTGCATCATTCTCCTTGCTTGGAATGCAATGTGCTACTCTTTCCCTTTTCTGCTGTTTGTGTTGTTATGCTGCTGTGTGCCACTAATTAGCACCCTCCTCGGCTACAACATGAACATGGCCTCTTCCAATAAAGGAGCTTCTAATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCTGGAGCCAAGTTAGAGCTTGGCAATGCCTCTGAAGGCAGTGAAAAATTGATCAATGAAGACCCAGAATGTTGTATCTGCTTGGCCAAGTACAAAGACGAAGAGGAAGTTAGACAATTGCCATGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAAAATTACATCATGTTGCCCTATTTGCAAACAAGGATTATAG 1014 0.4162 MNSRCFLVHPQQEYSMVPFSSNSATEDRVASARNRPPRVTPPSFLVRIAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALILQITITTFTLAISKRERPIWPMRIWVSGYDIGCVLNLLLLYGRYRQIYLTQGDSLSLSDIEQQRNNEETRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHHAPKLHVLCIILLAWNAMCYSFPFLLFVLLCCCVPLISTLLGYNMNMASSNKGASNDQISQLPSWRHKEAGAKLELGNASEGSEKLINEDPECCICLAKYKDEEEVRQLPCSHMFHLKCVDQWLKITSCCPICKQGL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2567 337 CDD RING-H2_RNF111_like 291 334 - -
Gso2g2567 337 SMART ring_2 293 333 IPR001841 -
Gso2g2567 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 337 IPR013083 -
Gso2g2567 337 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Gso2g2567 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 337 - -
Gso2g2567 337 Pfam Ring finger domain 292 334 IPR001841 -
Gso2g2567 337 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 337 - -
Gso2g2567 337 SUPERFAMILY RING/U-box 284 335 - -
Gso2g2567 337 Coils Coil 151 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2567 Gso-Chr2 49938974 49942117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2567 36 337 C3H Transcription Factor Family AT4G26580 69.079 1.02e-150 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2567 - - gmx:100813670 669.463