Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2550 ATGGCTGAGTCGGACAACGACTCGGGAGGGGCGCAGAACGCGGGAAACAGTGGAAACTTGAGCGAGTTGTCGCCTCGGGAACAGGACCGGTTTCTCCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCCTTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATAACGGGTGAGGCGTCGGACAAGTGCCAGAGGGAGAAGCGCAAGACCATCAACGGCGACGATCTTCTCTGGGCCATGACAACCCTGGGATTCGAAGAGTACGTGGAGCCTCTGAAGATTTACCTCCAGCGCTTCCGCGAGATGGAGGGAGAGAAGACCGTGGCCGCCCGCGACTCTTCTAAGGACTCGGCCTCCGCCTCCTCCTATCATCAGGGACACGTGTACGGCTCCCCTGCCTACCATCATCAAGTGCCTGGGCCCACTTATCCTGCCCCTGGTAGACCCAGATGA 498 0.5924 MAESDNDSGGAQNAGNSGNLSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREMEGEKTVAARDSSKDSASASSYHQGHVYGSPAYHHQVPGPTYPAPGRPR* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2550 165 MobiDBLite consensus disorder prediction 1 24 - -
Gso2g2550 165 MobiDBLite consensus disorder prediction 122 165 - -
Gso2g2550 165 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Gso2g2550 165 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Gso2g2550 165 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Gso2g2550 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Gso2g2550 165 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso2g2550 165 Gene3D Histone, subunit A 19 142 IPR009072 GO:0046982
Gso2g2550 165 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g2550 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso2g2550 165 SUPERFAMILY Histone-fold 28 136 IPR009072 GO:0046982
Gso2g2550 165 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2550 Gso-Chr2 49822139 49823034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2550 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.000 5.41e-75 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso2g2550 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2550 K08065 - gmx:100500556 324.324