LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g2546	ATGACCTTTAAGTTTTGCAGATTTATTCTCTGTAAAAAGTGTGTTAGTGTTAGATTGAACTTGTGTTGCACTGTTGCTATTTCTGGAAATCTAATGCTCCTTGACAAGAACTGCAGTTGGATAAGTCCTCCACACGATCAACCTTTAAGTCCTATATTGCTGATCCTTGTTTCTAAATTCCTCTGCATGGCCAACAATGGTGCAAAGGATCCCTTGCTGTCAGGATCACTTGATGCGACTCAAAAGACTAAACAGCAGTTATTAAACAAGAGAAGGCTCCTCCGTTCTAGAAGTGCTCCTCACGCAGAGCTTGTTCCTACAGAGACAAATTGCAATGAATCAATTCCTCGTACTGCATCCATATTTCAGAATTTGCATCCAAGTTTTAAAAGAATGGCTATCTACCTTGCAGTCTATTTAGGTGTAGGTGCTTTAATCTTCTACCTTGTCAGAAACCAGATTAAGGGGCAGAAAACAGATGGAATTCTTGATGCTTTATACTTCACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCAAATAGCCACCTTGCAAAACTACTTGCATGTGCTTTTGTTTTCTCTGGGATGGCATTGATTGGACTAATTGTAAGCAAAGCAGCAGACTACTTAGTTGAGAAACAAGAACTTTTGCTAGTTAAAGCCATGCGCATGCACCAAAAAATTGGTTCAACTGAAATTTTAAGGGAGGTTGAGACCAATAAAACAAGATACAAATTATTTCTAGTCTTTTCCCTTCTTTTGATTCTCATCATCGTGGGGACAATTTTTTTGGTCACAGTTGAGAAATTGGATGTTATAGATGCATTCTACTGTGTTTGTTCTACAATTACAACACTGGGTTATGGGGATCAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTGACAGGTACTATTACTTTAGCTCAGCTTTTCGTCTACATTGCTGAACTAAACACTGAAATCAGACAAAAGGAACTTGTCAAGTGGGTACTTACAAGGAAAGTGACCAATTTAGATTTGGAGGCTGCAGATCTTGATGAGGATGGGACTGTTGGGGCTGCGGAATTCGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTTGATGTTGATGATTCTGGCACACTATCAACTTCGGATATAACACTTGCTCAGTCATCTTAG	1236	0.3892	MTFKFCRFILCKKCVSVRLNLCCTVAISGNLMLLDKNCSWISPPHDQPLSPILLILVSKFLCMANNGAKDPLLSGSLDATQKTKQQLLNKRRLLRSRSAPHAELVPTETNCNESIPRTASIFQNLHPSFKRMAIYLAVYLGVGALIFYLVRNQIKGQKTDGILDALYFTIVTMTTVGYGDLVPNSHLAKLLACAFVFSGMALIGLIVSKAADYLVEKQELLLVKAMRMHQKIGSTEILREVETNKTRYKLFLVFSLLLILIIVGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDQSFSTQAGRIFAVFWILTGTITLAQLFVYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSTSDITLAQSS*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g2546	411	Coils	Coil	77	97	-	-
	Gso2g2546	411	Gene3D	-	230	340	-	-
	Gso2g2546	411	Pfam	Ion channel	135	215	IPR013099	-
	Gso2g2546	411	Pfam	Ion channel	256	327	IPR013099	-
	Gso2g2546	411	ProSitePatterns	EF-hand calcium-binding domain.	354	366	IPR018247	-
	Gso2g2546	411	ProSitePatterns	EF-hand calcium-binding domain.	393	405	IPR018247	-
	Gso2g2546	411	PANTHER	TWO PORE POTASSIUM CHANNEL A	83	406	-	-
	Gso2g2546	411	SUPERFAMILY	Voltage-gated potassium channels	221	347	-	-
	Gso2g2546	411	SUPERFAMILY	EF-hand	313	407	IPR011992	-
	Gso2g2546	411	PRINTS	Two pore domain K+ channel signature	285	313	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gso2g2546	411	PRINTS	Two pore domain K+ channel signature	359	368	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gso2g2546	411	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	83	406	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gso2g2546	411	Gene3D	-	126	220	-	-
	Gso2g2546	411	SUPERFAMILY	Voltage-gated potassium channels	126	231	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g2546	Gso-Chr2	49800723	49803384	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g2546	116	411	Ion Channels	AT5G55630	66.554	1.57e-147	421

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso14g0123	14	1081513	1084616	Gso2g2546	2	49800723	49803384	GST