Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2542 ATGATGATGGGGTTGGTGTCTTCCAGAGTTGTGTTCTTGTTTGTTGTTTCGGTTTTGGTGATTTGGGCTCAGGTGGATTTAGCAGAAGGTGGTGGTGTTAGGAATTACATTAGTTGGGAAGATTTGCAGGTGGATGAACAAAGGTTGGCCGTGAATTCCCATAACAATGTTCGAGTTATTATTGTTAACCAGAATGGTGGGGGACATTCAAAAACTGTTCAAGGTGCTGTCAATATGGTTCCTGATAATAATACACAAAGGGTCAAAATTTACATTTATCCAGGAATTTACAGAGAAAAAGTGTATGTGCCTGTCACCAAGCCTTATGTATCATTTATAGGGAAAACAAATCAAACAGCAAGTCCTGTTATTACTTGGAACAGCAAGTCATCTGACATAGGCCCAAATGGCACAGCATTGGGCACCTATGCTTCAGCAACAGTAGGAGTGGACTCAAATTATTTCTGTGCAACCGGGGTCACTTTTGAGAACTCAGTGATTACATCGGCTGGTGGAAAAGGGATGCAAGGAGTGGCACTGAGGGTAAGCAGTCCAAAAGCAATGTTCTATCGAGTGAGGATTAAGGGGTCACAGGACACTCTCTTGGACAACATAGGAAATCATTACTTCTTTAAGTGTCACATCATAGGAAAAGTTGATTTTATCTGTGGCAGAGCAAAATCACTCTATGAGAAGTGTCGTCTTCAGTCTATAGCTGAGAACTATGGAGCAATAGCAGCACATCATAGGGATTCACCAACAGAAGACACAGGTTTTTCTTTTGTAGGGTGCAGTATTAGAGGATCTGGCAGTGTGTACCTTGGCAGAGCATGGGGGAACTACTCAAGAATTATATACTCCAAATGTAATATGGATGGCATTATTAATCCTCAAGGGTGGTCAGACTGGAATCGTTCACATAGAAAGAAGACTGCAGTGTTTGCTGAGTATCAATGCAAGGGAAGAGGAGCAGAGAGAAGACATAGGGTGCCTTGGTCAAAATCATTCAGCTATCATGAAGCAAGTCCTTTCCTTTACAAGAGCTTCATAGATGGAGACCAGTGGCTCAGACTGTAG 1077 0.4225 MMMGLVSSRVVFLFVVSVLVIWAQVDLAEGGGVRNYISWEDLQVDEQRLAVNSHNNVRVIIVNQNGGGHSKTVQGAVNMVPDNNTQRVKIYIYPGIYREKVYVPVTKPYVSFIGKTNQTASPVITWNSKSSDIGPNGTALGTYASATVGVDSNYFCATGVTFENSVITSAGGKGMQGVALRVSSPKAMFYRVRIKGSQDTLLDNIGNHYFFKCHIIGKVDFICGRAKSLYEKCRLQSIAENYGAIAAHHRDSPTEDTGFSFVGCSIRGSGSVYLGRAWGNYSRIIYSKCNMDGIINPQGWSDWNRSHRKKTAVFAEYQCKGRGAERRHRVPWSKSFSYHEASPFLYKSFIDGDQWLRL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2542 358 PANTHER PECTINESTERASE QRT1 15 358 - -
Gso2g2542 358 Pfam Pectinesterase 60 353 IPR000070 GO:0030599|GO:0042545
Gso2g2542 358 SUPERFAMILY Pectin lyase-like 59 356 IPR011050 -
Gso2g2542 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 358 - -
Gso2g2542 358 Gene3D - 54 358 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2542 Gso-Chr2 49779316 49782313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2542 33 310 Carbohydrate Esterase AT5G55590 56.040 2.23e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2542 K01051 - gmx:100813382 727.628