Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2531 ATGGATTCTCCCTACACAAGAATAGTCTTTGAGAAAATTCAGAAATTTGAGCCAGAGCATGCTAGAAAAATAATTGGCTATCTCTTCTTTCAAGGTCATGGAGAACAAGAAATGGCTAAATTGGCTTCATGCCCCGACTATTTTATCTGTGAAGTGGTAGTTCAGGCCAAAAAGGAACTCCAAAGGTTGGCTGCTAAACCAGATATGCTCCCGATTTCTCGTACTGTCAACCCTCAACAAGGTTTAAGTGATTTATCAGTAATCTCCCCTAGAACTCCTACTTCACCAAACTTTCAGATGCCTCCTCCCTATTGGGATCCACAATCTGCTGCAAACATCAATCCAGACTTTATGGGAATGAATTACTTGGATTCTATTGTAGAACTTCAGAAGCAGACACAGATGCTCACTTTGGAGAATCAAATAGATGCTGTAAAAACTGGGACTGGAGGAATCGCCAACGATCACTATGGCTTAGACGCTTCTGCTGCCAATTTGGGTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATGTGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGTCCCTGAGAATTTCTCTCAGATGCATGCAAATGATGCTATTGGTGAGGATCAGGTGATTTCCCCAGGGTCACTGGCTCAGTTAGAGTCTGAAATTATTGAGCTCCTAAGAGCAAAAGGCGGTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTACGATAAATATAAAAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGTCAGAGGCATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCACGACTGAAAAATAGTATTCAGCTAATAGGCAGACCTCATGGGCAGCATTCAGTGGTTCTGGCAGAAGATTCTCCCACACAAATGCAAAAGGGAGATTTTGCTCGAAATATCAGTGCTTCATACCAAATATATCTGACGTTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACTTTTGGACCTGTTGCAGATGTCAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAAGTGTTTTGGATAAGGGGAATCCCCATTGTGTTCGGGGTTCTCGGGTGCTTGTGAAACCTTACCGGGAGAAGGCAAAGGTTAATGAAAGGAAGTACACAGATAGAATTGAGCACCCTATTTGTTATTCACCACACTATGTAGATATGGACGCTGAACTTAACTCAATTCCAAGAAGTTTTGGGAGCCATGGATCCATTAGGAGACACCTACAACTAATTGAACAGGAAGAGCAGGAGCAAGCTCTTGAACGTCAGAGAAGTCTTGCACAGCTGCATTTTGCCCAAAAATCTTTCTTCAGTTCACCTCATTTTGGCTTCTCCATGGATGAGTCAAGGATTTCAGATGATCACTTCAATTTCCAGCCAGCAGAAGAATCTTTCAGTTTTCCACTGCATGTCAAATCCAGGCATACAGACTCCAATTACTCTGATGAGGACAGCAATGAAGGACTCAATCTCCCGGACAGTCCATTTGCATTTCCACTAGATAGATAG 1626 0.4231 MDSPYTRIVFEKIQKFEPEHARKIIGYLFFQGHGEQEMAKLASCPDYFICEVVVQAKKELQRLAAKPDMLPISRTVNPQQGLSDLSVISPRTPTSPNFQMPPPYWDPQSAANINPDFMGMNYLDSIVELQKQTQMLTLENQIDAVKTGTGGIANDHYGLDASAANLGGRRFSEFPMKMCHYFNKGFCKHGTSCRFYHGQVVPENFSQMHANDAIGEDQVISPGSLAQLESEIIELLRAKGGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIQLIGRPHGQHSVVLAEDSPTQMQKGDFARNISASYQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKSVLDKGNPHCVRGSRVLVKPYREKAKVNERKYTDRIEHPICYSPHYVDMDAELNSIPRSFGSHGSIRRHLQLIEQEEQEQALERQRSLAQLHFAQKSFFSSPHFGFSMDESRISDDHFNFQPAEESFSFPLHVKSRHTDSNYSDEDSNEGLNLPDSPFAFPLDR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2531 541 ProSiteProfiles OST-type HTH domain profile. 224 306 IPR025605 -
Gso2g2531 541 SUPERFAMILY CCCH zinc finger 175 198 IPR036855 GO:0046872
Gso2g2531 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 392 IPR000504 GO:0003723
Gso2g2531 541 SMART rrm1_1 326 396 IPR000504 GO:0003723
Gso2g2531 541 SUPERFAMILY RNA-binding domain, RBD 335 407 IPR035979 GO:0003676
Gso2g2531 541 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 540 - -
Gso2g2531 541 Gene3D - 171 231 - -
Gso2g2531 541 MobiDBLite consensus disorder prediction 514 541 - -
Gso2g2531 541 Gene3D - 332 406 IPR012677 -
Gso2g2531 541 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 540 - -
Gso2g2531 541 Pfam OST-HTH/LOTUS domain 224 302 IPR025605 -
Gso2g2531 541 CDD RRM_AtC3H46_like 327 396 IPR034365 -
Gso2g2531 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 400 IPR000504 GO:0003723
Gso2g2531 541 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2531 Gso-Chr2 49681408 49687885 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2531 - - gmx:100810174 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0133 14 1180512 1186847 Gso2g2531 2 49681408 49687885 GST
Gso18g0685 18 7771747 7776376 Gso2g2531 2 49681408 49687885 PCT
Gso8g2697 8 44640801 44645783 Gso2g2531 2 49681408 49687885 PCT
Gso2g2531 2 49681408 49687885 Gso18g0685 18 7771747 7776376 PCT
Gso2g2531 2 49681408 49687885 Gso8g2697 8 44640801 44645783 PCT