Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2523 ATGACAGAACTGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACCGATGACGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCAGTGATCATGAGAGATCGGACAACAGGCCGTGCTCGTGGTTTCGGATTTGTTGTCTTTGCTGATCCTTCTGCTGCGGAGAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCCAAGAAAGCTGTTCCTAGGGATGATCAGCAAACTATAAACAGACAGACTGGTAGCATCCATGGATCTCCTAGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAGAAGTACTTTGATCAGTTTGGTACAATTACTGATGTTGTTGTAATGTATGACCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAGACATTTCATGAACTCAATGGGAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTACCCGAAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAATCCAATTGGAGGTTATGGAGTCAGGATGGATGGAAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTTAGGATTGAACCCAAGCTATGGAGGGACTTCCGGTTATGGTGGCAATCTTGGATACGGTCGGATGAGTCCTTTCAACGATGGCAACTCTAACAGATACACCACTCCTATTGGCAATAGCGGGGGCAATGGGAGAAGCGGTTCTCTTATGAACTCAGCTTCTCGGAGTGTTTGGGGAAATGGGGGCCTGAACAATGCTGTCAATAGTCCAGTCAGCCCTGGCGCTTACTTGGGATCTGGAAGTGGGACTTTTGGTGTTTCAATTGGAAATGCTGGCACCAATTGGGGTCCATCAGTTCCAACCCAGGGTGGAGGGGCTGCCTCTGGGTATAGTACTTGGGGCTCTTATGAAGGTGGAGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGCCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGATTATGAAGGATCCTATGGGGACTTGTACCGCAATGGTTCAGTTTACAGTGACTCAACTTTGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTATGGTGGACTTGGTGGTATAGCTTCAGATGATCTAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCTTAG 1446 0.453 MTELMESDLGKLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQTGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNYGLNRTSSFLNSYAQGFNMNPIGGYGVRMDGRFSPLTSARSGFTPFGSSGYGMGVNLDLGLNPSYGGTSGYGGNLGYGRMSPFNDGNSNRYTTPIGNSGGNGRSGSLMNSASRSVWGNGGLNNAVNSPVSPGAYLGSGSGTFGVSIGNAGTNWGPSVPTQGGGAASGYSTWGSYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGDYEGSYGDLYRNGSVYSDSTLRSAASEIDASGSFGYGGLGGIASDDLVKSSEGFIGNYNVISRQTNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2523 481 MobiDBLite consensus disorder prediction 394 410 - -
Gso2g2523 481 MobiDBLite consensus disorder prediction 388 410 - -
Gso2g2523 481 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 481 - -
Gso2g2523 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 170 IPR000504 GO:0003723
Gso2g2523 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gso2g2523 481 Gene3D - 109 189 IPR012677 -
Gso2g2523 481 CDD RRM2_DAZAP1 108 187 IPR034131 GO:0003723
Gso2g2523 481 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Gso2g2523 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 481 - -
Gso2g2523 481 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gso2g2523 481 SMART rrm1_1 111 183 IPR000504 GO:0003723
Gso2g2523 481 Gene3D - 10 92 IPR012677 -
Gso2g2523 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Gso2g2523 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Gso2g2523 481 SUPERFAMILY RNA-binding domain, RBD 109 197 IPR035979 GO:0003676
Gso2g2523 481 MobiDBLite consensus disorder prediction 90 104 - -
Gso2g2523 481 MobiDBLite consensus disorder prediction 84 109 - -
Gso2g2523 481 CDD RRM1_hnRNPA_hnRNPD_like 12 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2523 Gso-Chr2 49620019 49623982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2523 9 184 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 7.20e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2523 K14411 - gmx:100814628 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0141 14 1239097 1243275 Gso2g2523 2 49620019 49623982 GST
Gso18g0692 18 7886447 7890816 Gso2g2523 2 49620019 49623982 PCT
Gso8g2692 8 44569565 44573999 Gso2g2523 2 49620019 49623982 PCT
Gso2g2523 2 49620019 49623982 Gso18g0692 18 7886447 7890816 PCT
Gso2g2523 2 49620019 49623982 Gso8g2692 8 44569565 44573999 PCT