Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2519 ATGTGCAGTGATTCAAAAAGTAAACTACTTTCTTCCCCAACCCTCGTCATGGAGGATGGTCTCTACAACAACTCGGTTTTGCTTGAATTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAGGTGGATGAAAAGGGCTTAGATGTGAACGAGGCAGGCTTATGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACCAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCGCTAAGGTGCTCAATTGTATTCTTCTTGAGAAGAAAGGAGGAGGTGTTGATGTGAACAGGGTCTGTGGTTCTGATAGGGCCACAGCTCTACATTGTGCGGTTGCCGGGGGCTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCTGATGCCGAGTGCCTTGATGCCAGTGGCAACAAGCCGGTCAATCTGATTGCTCCTGCCTTTGATTCTTTGTCAAAATCGCGAAGGAAGGCCATGGAGATGTTCCTCAGGGGTGGTGGGGAAAGAGACGATGAACTCATGAGCCAGGAGATTCAAGAGAGAAAAGAAGCAATTAGTGATAATAAGAAAGAATACCCTGTTGATATATCACTGCCAGACATAAACAACGGTGTATATGGAACAGATGATTTTAGGATGTACAACTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACCGAGTGTCCATTCGTTCACCCAGGGGAGAACGCTAGGAGGAGAGACCCACGGAAATACCCTTACAGCTGTGTTCCTTGCCCAGAGTTCCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTGCATCCTGCCCAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCGCTAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGCTACGCCCTGTCTATGCTTCCACTGGCTCGGCTATGCCATCACCAAAATCATATTCAGCTAGTGGACTTGACATGACTGCCATGAGTCCATTGGCTCTAAGTTCCACATCTTTGCCTATGCCCACCGTTTCAACCCCACCCATGTCTCCCTTGACAGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATTAACCTTACTCCTCCATCGTTGCAGCTTCCTGGTAGCCGACTGAAGGCTGCTCTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGCTCGGTCTAGAAAGCCCTGCCCGCCACCACCACCACCAACAACAACAACAACAACAACTGATTGAAGAGATTGCTAGGATCTCTTCCCCTTCTTTCCGGAGCAAGGAATTCAATAGGATTGGTGATTTGAATCCTACTAACCTTGATGACCTGTTATTAGCATCTGCCGACCCTTCTGTATTATCTCAACTACAAAGTGGGCTTCAGATGCGGCAAAGCATGAACAACCACCTCCGTGCGAGTTATCCATCCAACGTCCCTTCCTCTCCTGTGAGGAAGCCCTCATCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAACTGCAATGATGAATTCCAGGTCCGCCGCGTTTGCAAAGCGAAGCCAAAGTTTCATCGATCGTGGAGCTGCTGCAACCCACCACCATCTTGGGGGGATGTCTTCCCCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGGTTGGAGTTCCCCTACCGGGAAACTGGATTGGGGCGTAAATGGAGATGAGCTGAACAAGCTGAGGAAATCTGCTTCCTTTGGTTTCAGAAACAGTGGGGTAACTGCATCATCATCATCATCCCCCATAGCACAGCCAGAATTTGGCACCGAGCAGGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCCGAGAGGTCTGAGAAGCAACAATATGATCATCTCAGCAAAGAGATGCTTCTTTCACCATGGGTAGAAGCAACAATATGA 1974 0.4878 MCSDSKSKLLSSPTLVMEDGLYNNSVLLELSASDDFEAFKREVDEKGLDVNEAGLWYGRRIGSKKMGSETRTPLMIASLFGSAKVLNCILLEKKGGGVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAECLDASGNKPVNLIAPAFDSLSKSRRKAMEMFLRGGGERDDELMSQEIQERKEAISDNKKEYPVDISLPDINNGVYGTDDFRMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLTASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLESPARHHHHQQQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLLASADPSVLSQLQSGLQMRQSMNNHLRASYPSNVPSSPVRKPSSFGFDSSAAVATAMMNSRSAAFAKRSQSFIDRGAAATHHHLGGMSSPSNPSCRVSSTLSGWSSPTGKLDWGVNGDELNKLRKSASFGFRNSGVTASSSSSPIAQPEFGTEQDVSWVHSLVKDVPSERSEKQQYDHLSKEMLLSPWVEATI* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2519 657 SUPERFAMILY Ankyrin repeat 22 151 IPR036770 -
Gso2g2519 657 Gene3D - 258 320 - -
Gso2g2519 657 PANTHER UNKEMPT FAMILY MEMBER 18 655 IPR045234 -
Gso2g2519 657 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 655 - -
Gso2g2519 657 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Gso2g2519 657 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Gso2g2519 657 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Gso2g2519 657 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Gso2g2519 657 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Gso2g2519 657 Gene3D - 22 170 IPR036770 -
Gso2g2519 657 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Gso2g2519 657 SMART ANK_2a 107 139 IPR002110 GO:0005515
Gso2g2519 657 SMART ANK_2a 69 102 IPR002110 GO:0005515
Gso2g2519 657 Pfam Ankyrin repeats (3 copies) 67 138 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2519 Gso-Chr2 49590559 49593645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2519 3 635 C2H2 Transcription Factor Family AT5G12850 39.372 3.19e-133 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g2519 Ank_2 3.8e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2519 - - gmx:100812481 1252.65