Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2509 ATGGAGGATGCCGTCCCCGATCCCCAACCGGAGGAGCAGCCGCAGCGTCCTCCGCCGCTTCTGAACGGGTACTCCGACGAGCGCTGCGCCAAGAAACCTAAATTCGACGAAGGCGCCGAATTGAAGAGAGTGGCGGAGATTGTGCTCGTTCTCTCCACCATGGCCACTGTGCGTGCCGGGAGGAAGCCCTCCGACGCCGAGGTCGAGCTCATGAGGGAGGCTCGCGCCAAGCTGGCGAGCCTCTGCGAGGGTTTGGCTCCGAAGGATATTGTCGCCGGGGAAGCTATTGGCACCGTCATCGAGGATCTTGGATTGAACTCCAAGCTTAAGGACCAGAGATTAGGGTTTCGAACTCCCAAGATGTCCATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAAGAAGCAAAGAAATTTTCTGCATCTTCTACACCTTCTACAACACACACATCTCAGCCCTTGCAAACAAACATTGGTGGACCAGTTGACAATCGTGTGCCATCACATGTTGTTCGAATTTTTCCTTCTGATAAATCAAGCCACCCAGCAATCCCTTCTATGGGTACCGTAGTGCCTATTCCTGCCCATGTTTCTGCGGGATCTTCTGCAGCATTGCAATATCAAGTAACCGGCAATGAAGTAAGACCACCAGTGGTTTCTGGTGTGATGCCTAGCAGTCACTTGGGGAGAAATTCATCTTCCTTAGCATTGCCTAAAGTTGAACGCCCACAGTTTAAAGTTGATGGAGGATCAAATGGGTCTCCTTACATGCTGCAAGTCCAAGCAAATTCATCTGCAAACCAACCTTTGGTGAATGCTCCAACATGGTCTATACAGACTCAAGCTGCTTCATTAGCCAGAAGTGCATCAGAAAACAAGGTGCCTGTTCATAACTCTGTCAAGGTTGAGGGAACACCTGATGCAACTGTATCAAGGGCAGGGACACAAATAACAACAGACTCGAGCTTTAGACCATTTATCACTCAAACAGCCCCTGGAAATTTACCTAGTGTGCACCAGCCATTGCAGGCCACAAACATTGTTCAGGCTCCTTTGATTCCTAGTCACACTGATATTGCTAAGATTGTCCAGAAAGTGTTACAACCAAAGCTTCCTGTCCATCCCACGTGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTCACATGTCAGATGTGTGAACTCAGTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCTTGAGAGGAATTCATAATAGAGTTGATTGGCATTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGATCCTCAAACACACCGCCAAAATTGCCCTCTAATACAGGTGGCGTTCAACCATGTTCTGAGAAGAAAGTAGAGAATATCGATCCAAAGGTCATCCCACAGACGTTAGCAACAAATGGGAGCTCTGTTCCAACTGTTTCCGGTGGCCATCACAATGTTGAGTTGCCATCCGAATCAAAGATACCAGATACCAAAGATATGCAAGGGACTGGCATTTCATCCACCATTGAAGCTATTGATAAGAAGCCTGATCCAAAGAACTCTATGAAATCTCTTAGTGCAGCTTATAGTCCTTCCCCTTGCTTGCTAGGTGAAAATTCTGCTCAACAAATAAATTCTAAGGTTTTGACTGGTAGAGAGACTTCGGAATCTGAGTCTCTTCCTAAATTATCTGAGCTAGCTAAGTGTGAAAATTTGCAATCATCACAAGATTTTCAAGTTGAACATACAATGTCACAAGACAATGCTGAAGTATCATCAGATAAACATGTTGACAGTAATATGATGAATAACCAACAGAAGGAATCTCATGGAGAAGAAAATTTAGTTTATGATATAAAGCGTGATGACCAAGATGCTGCACTTGAAAATTCTGTTGGAACTTCTGGAACTAATACTGATGGTAGACAGCACTCTGCATTATCTTCAGATAGTTCACATGCTGTAGAATGGATTGGTGATGTAGTACAACTTGTAGATGAGAAAAAGTATTACCAATCTTGCTGTGTTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCCACCGGCCATGGGAAACTAACTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAACTGCTACTTTCCTGATGATTTGCCTGGGAATATTGGTCATCCGTGTATATCTGAAGTCAACGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCGAGGGCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAGAATGACAGGCGATGTCAGTTACGAAATGAGGAAAGTTCTAGAGTGCAGCCCATTTTCCTATGCAGGTGGTTTTATGATGAATTCAAGAAGTTATTTCAACCTGTAATCAGTTGA 2493 0.4469 MEDAVPDPQPEEQPQRPPPLLNGYSDERCAKKPKFDEGAELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARAKLASLCEGLAPKDIVAGEAIGTVIEDLGLNSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSASSTPSTTHTSQPLQTNIGGPVDNRVPSHVVRIFPSDKSSHPAIPSMGTVVPIPAHVSAGSSAALQYQVTGNEVRPPVVSGVMPSSHLGRNSSSLALPKVERPQFKVDGGSNGSPYMLQVQANSSANQPLVNAPTWSIQTQAASLARSASENKVPVHNSVKVEGTPDATVSRAGTQITTDSSFRPFITQTAPGNLPSVHQPLQATNIVQAPLIPSHTDIAKIVQKVLQPKLPVHPTWTPPSRDYMNKAFTCQMCELSVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGVQPCSEKKVENIDPKVIPQTLATNGSSVPTVSGGHHNVELPSESKIPDTKDMQGTGISSTIEAIDKKPDPKNSMKSLSAAYSPSPCLLGENSAQQINSKVLTGRETSESESLPKLSELAKCENLQSSQDFQVEHTMSQDNAEVSSDKHVDSNMMNNQQKESHGEENLVYDIKRDDQDAALENSVGTSGTNTDGRQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCVDGVTYRLQGHALFPTGHGKLTPSKLQSMWEDCKTGLKWVKVTNCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIRGPCEVLPSDKFKQENDRRCQLRNEESSRVQPIFLCRWFYDEFKKLFQPVIS* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2509 830 ProSiteProfiles BAH domain profile. 702 829 IPR001025 GO:0003682
Gso2g2509 830 SMART PHD_3 391 440 IPR001965 -
Gso2g2509 830 ProSitePatterns Zinc finger PHD-type signature. 392 439 IPR019786 -
Gso2g2509 830 Pfam PHD-finger 392 440 IPR019787 -
Gso2g2509 830 SUPERFAMILY FYVE/PHD zinc finger 382 447 IPR011011 -
Gso2g2509 830 Gene3D - 681 829 IPR043151 -
Gso2g2509 830 MobiDBLite consensus disorder prediction 290 316 - -
Gso2g2509 830 MobiDBLite consensus disorder prediction 652 673 - -
Gso2g2509 830 CDD BAH 701 824 - -
Gso2g2509 830 ProSiteProfiles Zinc finger PHD-type profile. 389 442 IPR019787 -
Gso2g2509 830 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g2509 830 MobiDBLite consensus disorder prediction 532 551 - -
Gso2g2509 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 453 IPR013083 -
Gso2g2509 830 MobiDBLite consensus disorder prediction 492 526 - -
Gso2g2509 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 26 829 - -
Gso2g2509 830 MobiDBLite consensus disorder prediction 140 163 - -
Gso2g2509 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 26 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2509 Gso-Chr2 49500363 49508125 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso2g2509 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2509 - - gmx:100807139 1652.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0154 14 1332296 1340660 Gso2g2509 2 49500363 49508125 GST