Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2501 ATGGAGATGCTTCTTCGACCGGTCCTTTTTCCTCTTCTATTGTTTCTTTTCTGCTCTTCTTGGGTTGAAGGAGCCATGGATTGTTGGGGGAACAAAATCCAACACACCATCGTAGTTGATCAACATGGCAAAGGAGAATTCAGAACCGTTCAAGCTGCTTTTGATTCGATAAAGGAAAACAATGATCGATGGGTCAAAGTTCACATAAATGCTGGCACATACACAGAGAAAGTTCAAATTTCCATTTACAAGCCATGCATCTTTTTAGAAGGTTCCGGCAAAGAGGTCACGACCATTACATCAAGTGGCTTCCACAGTACTTCCACCATTAATATTAATGCATCAAGTGATGACAACAGCCAAAGTGACAACACGGGTGCTACATTTGTTTCTTTTCCATCCAATGTTATTGTTATTGGCATTACTTTCGAGAACTCGTTTAATCTGGTGGGATCACAATCCATCGCACCTGCACCCGCGGCAGCCATATACGGTGACAAATCTGTGTTCTTTAAGTGTGGTTTCGTAAGTTATCAAGATACTTTATTTGATTCAAAAGGACGTCATTATTTCAAAGATTGTTACATTGGAGGTGAAGTGGACTTTATTTATGGAAGTGGTCAATCTTATTATGAGGCTTGCACCATTAATGCTACTCAGGAAAGATCTTTTCCAGGTTTTGTAACAGCCCAATTCCGAGATTCAGAAATTGACACAAGTGGTTTTGTATTTAGAGCTGGTTGCGTAATGGGAATTGGTAGAGTGAATCTGGGAAGAGCATGGGGACCTTATTCAAGAGTTATATTTCACGGAACATACTTATCTCCAATAGTATCACCAGAAGGATGGAATGCTTGGGATTACACCGGCCAAGAGTCTAACTTAACTTATGCGGAGGTTGATTGTACCGGACCAGGAGCAAATACTGCAAAACGCGTTAAATGGGAAAAGAACCTTACTGGTTCACAGTTAAATGAATTTTCTTTATCATCTTTTATCAACCAAGATGGGTGGCTTTCCTACTTACCAATTACATTTTAG 1041 0.4006 MEMLLRPVLFPLLLFLFCSSWVEGAMDCWGNKIQHTIVVDQHGKGEFRTVQAAFDSIKENNDRWVKVHINAGTYTEKVQISIYKPCIFLEGSGKEVTTITSSGFHSTSTININASSDDNSQSDNTGATFVSFPSNVIVIGITFENSFNLVGSQSIAPAPAAAIYGDKSVFFKCGFVSYQDTLFDSKGRHYFKDCYIGGEVDFIYGSGQSYYEACTINATQERSFPGFVTAQFRDSEIDTSGFVFRAGCVMGIGRVNLGRAWGPYSRVIFHGTYLSPIVSPEGWNAWDYTGQESNLTYAEVDCTGPGANTAKRVKWEKNLTGSQLNEFSLSSFINQDGWLSYLPITF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2501 346 PANTHER PECTINESTERASE 1 345 - -
Gso2g2501 346 Pfam Pectinesterase 37 335 IPR000070 GO:0030599|GO:0042545
Gso2g2501 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 345 - -
Gso2g2501 346 SUPERFAMILY Pectin lyase-like 34 345 IPR011050 -
Gso2g2501 346 Gene3D - 30 346 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2501 Gso-Chr2 49444648 49446908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2501 10 292 Carbohydrate Esterase AT2G19150 41.319 9.54e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2501 - - gmx:100803932 687.182