Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2490 ATGGAACCCACTTGGAATGATGCCATTGTGAATGTTAGTAATTCTTCTGATCCAATCATGTCGTTTAGAGGGACACCGCTTGTCATGGATGAGCTTGATTTCTTTGCTCAGAAGAGAAAAGTGAGTGCAAATGATGATGATCATCAAAGAGTGGAAGACCTTCATGTTGATACTAGCTTAGATCTTCTTACGAAGAATGATACCGATGTCAATAATAGATCAACGGAGGAAGATGCGGCATTGGAAACTATGGATGATAAGAGCAACGAGTTTATAGCTTTGTTAACTGAATTGGACCAAATGAATGCTGAGAATCAACGCTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAG 1335 0.4307 MEPTWNDAIVNVSNSSDPIMSFRGTPLVMDELDFFAQKRKVSANDDDHQRVEDLHVDTSLDLLTKNDTDVNNRSTEEDAALETMDDKSNEFIALLTELDQMNAENQRLRELVDQVNNNCNTLRMQLVKLTQKHHSHGNNGVIGEKEDMVPRSFLDIGVAEKDEPNSQQSSEGKLRESKSMVELGHGKDIAVLEAYKLDSTAGRESTKARMEGRQISTEQEFSNKVPRLDPASETMSMIKKARVSVRAKSYSSMIADGCQWRKYGQKMAKGNPWPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTTSVAASMPSILESASLPCSRNMATLSASAPFPTITLDLTQNATNSSQLQRELPLGQLGLLSPLLAHKFMSVPKIFGQGMDTNSSFANILNAATADPNFTAALVAAITSVMGTSHSNTNATNSTSGDE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2490 444 ProSiteProfiles WRKY domain profile. 249 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g2490 444 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 438 IPR044810 GO:0003700
Gso2g2490 444 Coils Coil 84 132 - -
Gso2g2490 444 SUPERFAMILY WRKY DNA-binding domain 251 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso2g2490 444 MobiDBLite consensus disorder prediction 158 178 - -
Gso2g2490 444 SMART WRKY_cls 254 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g2490 444 Gene3D WRKY domain 239 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso2g2490 444 Pfam WRKY DNA -binding domain 256 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g2490 444 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 10 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2490 Gso-Chr2 49348312 49350713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2490 28 438 WRKY Transcription Factor Family AT1G62300 41.057 1.16e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso2g2490 WRKY 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2490 - - gsj:114372133 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0874 18 12040219 12043053 Gso2g2490 2 49348312 49350713 PCT
Gso8g2566 8 43118682 43121672 Gso2g2490 2 49348312 49350713 PCT
Gso18g0755 18 9171333 9175373 Gso2g2490 2 49348312 49350713 PCT
Gso8g2650 8 44155738 44160971 Gso2g2490 2 49348312 49350713 PCT
Gso2g2490 2 49348312 49350713 Gso18g0755 18 9171333 9175373 PCT
Gso2g2490 2 49348312 49350713 Gso8g2650 8 44155738 44160971 PCT