Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2485 ATGTGCGAAGCCGTAGAAATTGAAGAAAGGCCCAAATACAAAGATATCAGACGCTATTACTGCGAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTTATCACCTCCCACATCAATTTGCACCACAAGGAAGAGTATGAAAAAGCAAGAGCTAAAAGAGATCCCGAAGCAGAGGCTTCGAAATCGAACACTTGCGAGGAATGTGGTGCCACTTTCAAAAAACACGCCTATTTGTTGCAGCACATGCAAAGTCATTCACTTGAGAGGCCATTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCACCTGACTCGGCACCTTCTACAGCATGAAGGGAAGATTTTTAAGTGCCCTGTTGAGAATTGCAACAGTGAGTTCTCTTTGCAAAGCAATATGAAAAGACATACTGAGGAGATTCATGATGACAGTTCTACCACTACCAGTAGTGACAAAAGTCACAAACAGCATATGTGTCCAGAGATTGGCTGTGGAAAGGTTTTTAGATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAATTTGGAATCAGTAGATATGGTGTGCTTAGAGCCTGGTTGCTTGAAACATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTGAAGTCCTCCCATCAGTATATGACCTGTGACATTTGCGGGACAAAGCAACTGAAGAAGAATATTAAGCGTCATCTTCGATCACATGAAGCTGAAGGCAGTTCATCAGAGACCTTTCAATGCGAGTTTAAGGGTTGCAGCTGCACATTCTCAAGAAAATCTAATCTAGACAAGCATAAGAAGGCTGTGCACTTAAATGTAAAGCCTTTTGCTTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCATGAAAAAACTGCTAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAGTTCAGGTCAAGGCCAAGGGGAGGAAGGAAGAGAACATGTCCCACTGTTGAAGTGTTAATTAGGAAGAGGGTTACCCCACCTAGTCAATTGGAGCATTGGTTATTTATGCAGGATAGTGAGTAG 1089 0.4224 MCEAVEIEERPKYKDIRRYYCEYCGICRSKKTLITSHINLHHKEEYEKARAKRDPEAEASKSNTCEECGATFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTRHLLQHEGKIFKCPVENCNSEFSLQSNMKRHTEEIHDDSSTTTSSDKSHKQHMCPEIGCGKVFRYASQLQKHEDSHVNLESVDMVCLEPGCLKHFTNVQCLQAHVKSSHQYMTCDICGTKQLKKNIKRHLRSHEAEGSSSETFQCEFKGCSCTFSRKSNLDKHKKAVHLNVKPFACGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADEEFRSRPRGGRKRTCPTVEVLIRKRVTPPSQLEHWLFMQDSE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Gso2g2485 362 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Gso2g2485 362 Gene3D Classic Zinc Finger 91 116 - -
Gso2g2485 362 PANTHER - 9 350 - -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Gso2g2485 362 PANTHER ZINC FINGER PROTEIN 9 350 - -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Gso2g2485 362 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Gso2g2485 362 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Gso2g2485 362 Pfam Zinc finger, C2H2 type 161 185 IPR013087 -
Gso2g2485 362 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Gso2g2485 362 SUPERFAMILY beta-beta-alpha zinc fingers 158 187 IPR036236 -
Gso2g2485 362 Gene3D Classic Zinc Finger 158 243 - -
Gso2g2485 362 Gene3D Classic Zinc Finger 246 312 - -
Gso2g2485 362 SUPERFAMILY beta-beta-alpha zinc fingers 71 123 IPR036236 -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Gso2g2485 362 SMART c2h2final6 161 185 IPR013087 -
Gso2g2485 362 SMART c2h2final6 120 145 IPR013087 -
Gso2g2485 362 SMART c2h2final6 19 41 IPR013087 -
Gso2g2485 362 SMART c2h2final6 91 115 IPR013087 -
Gso2g2485 362 SMART c2h2final6 221 242 IPR013087 -
Gso2g2485 362 SMART c2h2final6 193 218 IPR013087 -
Gso2g2485 362 SMART c2h2final6 283 309 IPR013087 -
Gso2g2485 362 SMART c2h2final6 252 277 IPR013087 -
Gso2g2485 362 SMART c2h2final6 63 85 IPR013087 -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Gso2g2485 362 Gene3D Classic Zinc Finger 2 90 - -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 190 IPR013087 -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Gso2g2485 362 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Gso2g2485 362 Gene3D Classic Zinc Finger 117 157 - -
Gso2g2485 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Gso2g2485 362 SUPERFAMILY beta-beta-alpha zinc fingers 234 291 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2485 Gso-Chr2 49318600 49321038 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2485 87 312 C2H2 Transcription Factor Family AT1G72050 50.181 6.73e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g2485 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2485 K09191 - gmx:100801812 754.207