Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2475 ATGCCTTCGGCTCAAGATCCATTCTACGTTGTCAAGCAAGAAATTCAAGAATCTATTGATAAGCTAAAATCCACTTTTCACCAATGGGAAAACACTGCTGATGTTGGCGAGCGATCCAGTCTATCAAAGGAAGTTCTTGCTAGTTGTGAAAGCATTGCATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTGGCTGCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGGTTGAAAACCGGAGGAAGTGGACCAGTGATGCTCGCACCCAGGTGAGCAAAGCAAAGAGAACAGTGGAAGCTGGAAAGGGCTCAAACAATGCTAGTCTAAGTGGGATGCACAGGGAATTAATGAGGCTTCCTAGTTCTCATCAAACTACATCTAACCAATATGCTGCCCAGGATAATGATGATTTCATAGAGTCAGAATCAGACAGGCAGATGCTTCTTATAAAGAGACAAGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACTATACATGAAGAGCTCCTTGCGCAGGAAAAGATTATTGATGAACTTGGCAATGAGATGGATGGTACATCTAATCGCCTAGATTTTGTCCAGAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGCGCAAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCGATGTTTATTTTCCTCTTCATCTTGGTATTCTTCACCTAG 729 0.4266 MPSAQDPFYVVKQEIQESIDKLKSTFHQWENTADVGERSSLSKEVLASCESIAWQVDELDKAISVAARDPSWYGIDEVEVENRRKWTSDARTQVSKAKRTVEAGKGSNNASLSGMHRELMRLPSSHQTTSNQYAAQDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDGTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLAMFIFLFILVFFT* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2475 242 MobiDBLite consensus disorder prediction 91 111 - -
Gso2g2475 242 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Gso2g2475 242 Gene3D - 2 104 - -
Gso2g2475 242 SUPERFAMILY SNARE fusion complex 148 212 - -
Gso2g2475 242 Coils Coil 12 32 - -
Gso2g2475 242 PANTHER SYNTAXIN PROTEIN 1 241 - -
Gso2g2475 242 PANTHER SYNTAXIN 1 241 IPR045242 -
Gso2g2475 242 SMART tSNARE_6 145 212 IPR000727 -
Gso2g2475 242 Coils Coil 188 208 - -
Gso2g2475 242 Gene3D - 157 221 - -
Gso2g2475 242 Pfam SNARE domain 187 238 IPR000727 -
Gso2g2475 242 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Gso2g2475 242 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Gso2g2475 242 CDD SNARE_Qc 153 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2475 Gso-Chr2 49229245 49233224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2475 55 242 SNARE and Associated Proteins AT1G28490 68.421 4.32e-89 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2475 K08500 - gmx:100795447 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0194 14 1703638 1707284 Gso2g2475 2 49229245 49233224 GST
Gso18g0790 18 9759323 9763232 Gso2g2475 2 49229245 49233224 PCT
Gso8g2628 8 43926308 43930275 Gso2g2475 2 49229245 49233224 PCT
Gso2g2475 2 49229245 49233224 Gso18g0790 18 9759323 9763232 PCT
Gso2g2475 2 49229245 49233224 Gso8g2628 8 43926308 43930275 PCT