Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2472 ATGGGTTGTTGTATGAGTAAAAAAGGGTCAGAGCCAGAAGAACACATTGTTTACAGACATGTTGCGGGTGCTGGGGGTGCTGGTGTGTACAATAATCACAAGAGCCATGAACCCCCTTCTCATCAACCTTACCCATTACCTGAGAAGCATGCCCCTTGGAGGCCTCCACCAAGCCCAAAACATGTTCACAAGCATGACACAATCACTGGGAAGCCATTTGAGGATGTTAAACAGCACTACACACTTGGGAAGGAATTGGGGAGAGGCCAATTCGGGGTGACTTATCTCTGCACTGAGAATTCAACTGGTTTTCAGTATGCCTGCAAGTCCATTTCAAAGAGGAAGCTTGTGAGCAGAGACGACAAGGAGGACATGAAGAGGGAGATTCAAATCATGCAGCATTTGAGTGGACAATCCAACATTGTGGAGTTCAAAGGTGCTTTTGAGGATAAGCAATCAGTTCATGTGGTTATGGAGCTGTGTGCTGGTGGTGAACTTTTTGACAGGATTATTGCCAAGGGCCACTACAGTGAAAGGGCTGCTGCTTCAATATGTAGGCAGGTTGTTAAGGTTGTTAACACCTGCCATTTTATGGGTGTCATTCATAGGGATCTCAAGCCAGAGAATTTCTTGCTATCTAGTAAGGATGACAAGGGACTTCTCAAGGCCACGGATTTTGGCTTGTCAGTCTTCATTGAAGAAGGAAAGGTGTATCGAGATATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTACGTCGTAGCTATGGGAAGGAAGCAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGTCATATTGCAAGGTCATATTGATTTTGAAAGTAGTCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTTGTTCGCAAAATGCTTATAAAGGATCCAAAGAAACGCATTACTGCTGCTCAGGTTCTAGAGCACCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGCTTGAAGGCAATGTTCACAAATATCGACACTGACAATAGTGGTACAATCACATATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCAGCAGCTTATGGATGCTGCTGATGTGGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGGTTAGAAAGAGATGAGCACCTTCACAAGGCCTTCCAATATTTTGACAAAGATGGCAGCGGGTATATCACAAGAGATGAACTAGAAACAGCCATGAAGGAGTATGGTATGGGCAACGAGGCCACAATCAGGGAAATTATATCTGAAGTTGACACAGATAATGATGGTAGAATCAACTATGATGAATTTTGTACAATGATGAGGAGTGGAACCCAACAACAAGGCAAGCTATTCTAA 1587 0.4323 MGCCMSKKGSEPEEHIVYRHVAGAGGAGVYNNHKSHEPPSHQPYPLPEKHAPWRPPPSPKHVHKHDTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTENSTGFQYACKSISKRKLVSRDDKEDMKREIQIMQHLSGQSNIVEFKGAFEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQVVKVVNTCHFMGVIHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEADIWSAGVILYILLSGVPPFWAETEKGIFDVILQGHIDFESSPWPSISNSAKDLVRKMLIKDPKKRITAAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVQQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLHKAFQYFDKDGSGYITRDELETAMKEYGMGNEATIREIISEVDTDNDGRINYDEFCTMMRSGTQQQGKLF* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2472 528 CDD STKc_CAMK 79 337 - -
Gso2g2472 528 SMART efh_1 457 485 IPR002048 GO:0005509
Gso2g2472 528 SMART efh_1 421 449 IPR002048 GO:0005509
Gso2g2472 528 SMART efh_1 492 520 IPR002048 GO:0005509
Gso2g2472 528 SMART efh_1 385 413 IPR002048 GO:0005509
Gso2g2472 528 Gene3D Transferase(Phosphotransferase) domain 1 166 345 - -
Gso2g2472 528 ProSiteProfiles Protein kinase domain profile. 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2472 528 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 35 522 - -
Gso2g2472 528 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Gso2g2472 528 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Gso2g2472 528 SMART serkin_6 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g2472 528 Coils Coil 403 423 - -
Gso2g2472 528 MobiDBLite consensus disorder prediction 28 66 - -
Gso2g2472 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Gso2g2472 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 522 - -
Gso2g2472 528 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Gso2g2472 528 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Gso2g2472 528 CDD EFh 457 518 IPR002048 GO:0005509
Gso2g2472 528 CDD EFh 386 445 IPR002048 GO:0005509
Gso2g2472 528 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Gso2g2472 528 ProSiteProfiles EF-hand calcium-binding domain profile. 490 523 IPR002048 GO:0005509
Gso2g2472 528 Gene3D Phosphorylase Kinase; domain 1 82 165 - -
Gso2g2472 528 SUPERFAMILY EF-hand 377 517 IPR011992 -
Gso2g2472 528 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Gso2g2472 528 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Gso2g2472 528 Gene3D - 346 523 - -
Gso2g2472 528 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Gso2g2472 528 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Gso2g2472 528 Pfam EF-hand domain pair 456 518 IPR002048 GO:0005509
Gso2g2472 528 Pfam EF-hand domain pair 386 446 IPR002048 GO:0005509
Gso2g2472 528 Pfam Protein kinase domain 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2472 Gso-Chr2 49218592 49222929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2472 58 528 EF-hand Containing Proteins AT3G20410 81.818 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso2g2472 Pkinase 3.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2472 K13412 - gmx:100794568 1051.58