Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2471 ATGCCTATTACCAACAACACTTCTCACACTATGACCAACAACAGGTTTTCCGGAATGATAGAAACAGTAGCAATGTGTAAGCAACTTTGTTTTGGCGGTTCTGCACTTGGACTATTCACGAAAATTATCAAGAAAGTTCTATTTGCTCTATTTACTTGCATTCTGGCACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGCATCAAAGGGCAGACCACAGAAGCTGGTTTTCTTGATGGTGCTGGAAAAGGAGCAATTACAGGAGCCATTGCAGCATTGGAATTGATCAATTTTGATGCTTTTGATGAGCCAATTTCCAAGGTTGCCCTGTTGAGCAGTTTATTAAATGGGAAAATCTTTATGGAATGGATATGTCCGGCTGTTGCAAAACTCTATCAGTTGCATGTAACTGTTAACACACTGGAAACAATTTACCAAGAAGTATCGGACATTTATGATATCAGGGGAGTCAGAGGGATACCACATAATGTAATTCTGAAGCTTCCTTTTCAGCCATTCAACTCCAGAAAAATGTTGAAATCATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGGATACTTCCAAAATGTGACCACCTTTTTCATCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCCTGAATCCTGA 711 0.4008 MPITNNTSHTMTNNRFSGMIETVAMCKQLCFGGSALGLFTKIIKKVLFALFTCILALGGSIVGTIAGGIKGQTTEAGFLDGAGKGAITGAIAALELINFDAFDEPISKVALLSSLLNGKIFMEWICPAVAKLYQLHVTVNTLETIYQEVSDIYDIRGVRGIPHNVILKLPFQPFNSRKMLKSYNMSCCSICFQDFEDGELVRILPKCDHLFHLECIDKWLVQQGSCPMCRTYVPES* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2471 236 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 233 - -
Gso2g2471 236 Pfam Ring finger domain 188 230 IPR001841 -
Gso2g2471 236 SUPERFAMILY RING/U-box 187 235 - -
Gso2g2471 236 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Gso2g2471 236 CDD RING-H2_PA-TM-RING 187 230 - -
Gso2g2471 236 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 233 IPR044523 -
Gso2g2471 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 235 IPR013083 -
Gso2g2471 236 SMART ring_2 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2471 Gso-Chr2 49205694 49208032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2471 40 233 C3H Transcription Factor Family AT5G66070 34.975 5.78e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2471 - K19041 gmx:100305612 476.478