Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2449 ATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGTACTTTTCTGGAGCACATGAAGCGCAGTCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGACAGACACCACATTCATATGAACTCTACTCAGTGGGCCACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCCGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGATGAAGAAAAGCAAGAGAAGGAGATCAGGAGACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATATGGAAGATGGAATCAAGATAGGATTTTCTCTTGGGTCAACATCAGCTAAACCTGTGGTCAAGGAAAAACATGACGCGTCAAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATAATGGAAGGAATCCCGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATCGGAAGGATTATTGGTTGCACGAGGGAATTGTTGTCAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCACGTGCTCAGAGTTGATCAGGCCGAGCTTGAAACTGTGATTCCACAAGTTGGGGGGCGTGTAAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGAGCTTATGATGGCAGAGTACTTAAATCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAG 1197 0.4353 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVDEEKQEKEIRRQIEKAEQMMQPPTSEADQPSQVEPPRELNMEDGIKIGFSLGSTSAKPVVKEKHDASRVVFDEGDEEKYNGRNPGNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGAYDGRVLKSVEYEDICKVA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2449 398 Gene3D - 60 160 IPR038254 -
Gso2g2449 398 PANTHER BNAA05G13760D PROTEIN 1 398 - -
Gso2g2449 398 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Gso2g2449 398 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Gso2g2449 398 MobiDBLite consensus disorder prediction 180 201 - -
Gso2g2449 398 Gene3D - 342 398 IPR014722 -
Gso2g2449 398 Pfam KN17 SH3-like C-terminal domain 280 333 IPR041330 -
Gso2g2449 398 MobiDBLite consensus disorder prediction 235 249 - -
Gso2g2449 398 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 398 IPR037321 -
Gso2g2449 398 CDD KOW_KIN17 344 397 IPR041995 -
Gso2g2449 398 MobiDBLite consensus disorder prediction 235 268 - -
Gso2g2449 398 Gene3D - 288 341 - -
Gso2g2449 398 Coils Coil 156 183 - -
Gso2g2449 398 Coils Coil 261 281 - -
Gso2g2449 398 SMART Kin17_mid_2 52 178 IPR019447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2449 Gso-Chr2 49030697 49032856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2449 1 398 C2H2 Transcription Factor Family AT1G55460 69.712 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2449 K13102 - gmx:100785931 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0222 14 1926899 1929037 Gso2g2449 2 49030697 49032856 GST