Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2444 ATGGAAATCAAGAAGCTCCAGCCTCGCTTCTCTCTCGGCCGCCAATCCTCCCTCGCGCCGGAGCGCGGCGGCTGCGGCGGCGACGCGTCGGAGGCGCTGGACCCGGCGGTCCGGTTGATGTATCTGGCCAACGAAGGCGACTCGGACGGTATTAAGGAGCTCTTGGACGCCGGGAGTGACGTCAATTTCACCGACATTGACGGCCGCACCGCGCTCCACGTCGCCGCCTGCCAGGGCCGCACCGACGTAGTTGGCTTGCTGCTCCGACGAGGCGCCGACGTCGATCCTCAAGACCGCTGGGGCAGCACCCCTCTAGTTGATGCAATGTACTACAAAAATCACGACGTTGTCAAGCTTTTGGAGAAACACGGTGCAAGACCCCCGATGGCTCCCATGCATGTGCAAAATGCTCGTGAAGTCCCGGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGCGTTTGCATAACAAAGGGAACTTTTCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGATAAAGTAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTCCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACAGCTGTAAAGTTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCATGAACATAAACCAGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAACAGTCAAAGAGGACAAACCCGTGACAAGCCTGGATACATCATGGCGTTATGTTGCTCCAGAGGTATATAAAAATGAGGAATACGACACAAAGGTGGATGTATTTTCATTTGCTTTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTTTATGAAAAGCCTGAAAATGAAGTTCCCAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGACTAAAACAGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGACCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAGAGGCGCTGGAAGGTTAGGGCTCCTGGATGCTTCCAGAACCTGGAGGTCATATTTAGGGGCAATCGCACAAATCCAAGTAGCCGATCATCTCGCTCTACGGCCAGATAA 1365 0.4784 MEIKKLQPRFSLGRQSSLAPERGGCGGDASEALDPAVRLMYLANEGDSDGIKELLDAGSDVNFTDIDGRTALHVAACQGRTDVVGLLLRRGADVDPQDRWGSTPLVDAMYYKNHDVVKLLEKHGARPPMAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEELFTDDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRAYLKRKGALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTSLDTSWRYVAPEVYKNEEYDTKVDVFSFALILQEMIEGCPPFYEKPENEVPKAYVENERPPFRASPKLYAYGLKQLIEECWDEKPYRRPTFRQIIGRLEDIYYHLAQKRRWKVRAPGCFQNLEVIFRGNRTNPSSRSSRSTAR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2444 454 Gene3D - 29 139 IPR036770 -
Gso2g2444 454 PRINTS Tyrosine kinase catalytic domain signature 224 237 IPR001245 GO:0004672|GO:0006468
Gso2g2444 454 PRINTS Tyrosine kinase catalytic domain signature 263 281 IPR001245 GO:0004672|GO:0006468
Gso2g2444 454 PRINTS Tyrosine kinase catalytic domain signature 334 356 IPR001245 GO:0004672|GO:0006468
Gso2g2444 454 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Gso2g2444 454 Gene3D Transferase(Phosphotransferase) domain 1 151 418 - -
Gso2g2444 454 PIRSF ILK 2 433 - -
Gso2g2444 454 SUPERFAMILY Protein kinase-like (PK-like) 167 427 IPR011009 -
Gso2g2444 454 ProSiteProfiles Ankyrin repeat region circular profile. 67 99 - -
Gso2g2444 454 SUPERFAMILY Ankyrin repeat 38 130 IPR036770 -
Gso2g2444 454 ProSiteProfiles Ankyrin repeat profile. 67 99 IPR002110 GO:0005515
Gso2g2444 454 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 10 436 - -
Gso2g2444 454 SMART ANK_2a 67 96 IPR002110 GO:0005515
Gso2g2444 454 SMART ANK_2a 100 129 IPR002110 GO:0005515
Gso2g2444 454 SMART ANK_2a 34 63 IPR002110 GO:0005515
Gso2g2444 454 Pfam Ankyrin repeats (3 copies) 39 127 IPR002110 GO:0005515
Gso2g2444 454 Pfam Protein tyrosine and serine/threonine kinase 169 408 IPR001245 GO:0004672|GO:0006468
Gso2g2444 454 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 436 - -
Gso2g2444 454 CDD STKc_MAP3K-like 166 409 - -
Gso2g2444 454 ProSiteProfiles Protein kinase domain profile. 117 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2444 Gso-Chr2 48988306 48993357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2444 1 430 MAP Kinase Kinase Kinase AT4G18950 66.667 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Gso2g2444 PK_Tyr_Ser-Thr 1.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2444 - - gmx:100795964 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0229 14 1978029 1982868 Gso2g2444 2 48988306 48993357 GST
Gso2g2444 2 48988306 48993357 Gso4g0816 4 8466865 8474669 PCT