Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2441 ATGGAGTTTCCCAACGAAGCAATAATATCAGAAGGGTCTAATTCTCAGAAGAAAACGGGGAGAGGGAAAATAGAAATCAAACGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGATTGCTGAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGGACTATCGAAAGGTACAAGAAAGCATGTGCTGCTTCCACAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTCTATCAGCAGGAAGCGTCCAAATTAAAAAGACAAATCAGAGACATTCAGAATCTAAATAGGCACATCCTTGGCGAAGGTCTTAGCTCTCTGAGTCTAAAGGAATTAAAGAACCTTGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACTTTGTTTGCGGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGATAGCTGAAAACGAGAGAGCACAACAACGGCAACAGGATATGATACCGGGAACTGAGTGCGAGTCAACCATACCTAATTCACAATCATATGACCGCAATTTCTTCCCTGTTAATCTCATAGATTCCAATAATAATCAATATTCACGTCAAGACCAGACTGCTCTTCAACTTGTCTGA 741 0.4157 MEFPNEAIISEGSNSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASTNAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEGLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAENERAQQRQQDMIPGTECESTIPNSQSYDRNFFPVNLIDSNNNQYSRQDQTALQLV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2441 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 237 - -
Gso2g2441 246 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g2441 246 Pfam K-box region 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso2g2441 246 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 Coils Coil 139 159 - -
Gso2g2441 246 MobiDBLite consensus disorder prediction 1 24 - -
Gso2g2441 246 SUPERFAMILY SRF-like 20 96 IPR036879 GO:0003677|GO:0046983
Gso2g2441 246 Gene3D - 31 117 IPR036879 GO:0003677|GO:0046983
Gso2g2441 246 Coils Coil 105 128 - -
Gso2g2441 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Gso2g2441 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 14 237 - -
Gso2g2441 246 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2441 Gso-Chr2 48940929 48948246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2441 10 246 MADS-box Gene Family AT3G58780 71.193 1.52e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso2g2441 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2441 K09264 - gmx:100782733 471.855