Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2416 ATGATTTTGAAGGTTTCTCTCATTGTGGTTCTCCTAGTGATATGCTCCTGTGTTGTGGAAGCCATTTCTAGGAATCACAATCAAAATCCCAACCACAACAATATCAACAAAAATGGATCTTCTCTGGCTGCAATAAAGTTTCCTGATTATCCAAGTTTCAATGATGTCTCTTCTTCAGGGGACGATTGCAGCTTCTCAAATTCTGAGCAACTCGGACATTCTGGACCTACCATGACATCGGGTGAAGAAACTGATGAAGAGAGTGAAGCTTTTCCAGCACAAAAACCACACCAGAATTTGGTGAAATTCCACTTGAAACACAGGTCAGGGAGCAAAGATGCTGAGCCGAAACAATCTGTGGTTGATTTCACACTAAGTGATTTGACCAGAATTCAGAACCTTCACAGAAGGGTCATAGAGAAGAAGAATCAAAACACCATTTCAAGGCTGCAGAAGTCACAGAAGGAGCAACCAAAGCAGTCCTACAAGCCGGTGGTTGCTGCTCCGGCAGCTTCACGGACAACAAGTCCAGTTTCGGGGCAGCTTGTGGCAACCTTGGAATCCGGGGTGAGTCTTGGCTCTGGAGAGTACTTCATGGATGTATTTGTGGGGACACCCCCTAAGCATTTTTCTCTGATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCATGCATTGCATGTTTTGAGCAAAGTGGGCCATATTATGACCCCAAAGATTCTAGCTCTTTTAGGAATATAAGCTGTCATGATCCCCGGTGCCAATTGGTTTCAGCCCCCGATCCACCTAAGCCTTGCAAGGCTGAGAATCAGAGTTGTCCATACTTTTATTGGTATGGTGATGGTTCCAACACAACTGGGGATTTTGCATTGGAAACTTTCACTGTTAATCTCACCACTCCTAATGGGACTTCCGAGTTGAAGCATGTGGAGAATGTGATGTTTGGATGTGGTCATTGGAATAGAGGCCTATTTCATGGTGCTGCTGGTTTGTTAGGATTAGGGAAAGGACCATTGTCATTTGCTTCTCAGATGCAATCTCTCTATGGTCAATCCTTTTCCTATTGTCTTGTGGATAGGAATAGCAATGCAAGTGTTAGCAGCAAATTGATTTTTGGTGAGGACAAGGAGCTGCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGGTGGTGGGAAAGATGGTTCAGTTGACACATTTTACTATGTCCAGATAAAGTCTGTTATGGTTGATGATGAGGTGCTGAAGATACCTGAGGAGACTTGGCATTTGTCTTCAGAAGGTGCTGGTGGTACCATAATTGATTCTGGCACCACATTAACATATTTTGCAGAGCCTGCTTATGAGATTATCAAGGAGGCTTTTGTGAGGAAAATTAAGGGCTATCAGCTTGTTGAAGGCCTTCCTCCTCTAAAGCCATGTTACAATGTGTCTGGAATTGAAAAGATGGAGCTACCTGACTTTGGAATCTTGTTTGCTGATGAAGCAGTGTGGAATTTTCCAGTGGAGAATTATTTTATCTGGATTGATCCTGAGGTTGTTTGTTTGGCTATTTTGGGGAATCCTCGATCTGCCCTTTCAATAATTGGAAACTATCAGCAGCAGAATTTCCACATACTGTATGATATGAAGAAATCCAGACTTGGCTATGCACCAATGAAGTGTGCTGATGTTTATTTGCTTAAGGACTTTATTAGAGATTTAGAGTGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAATTGAAGAAGGTTAAGAAAAGCAATGGGCAAGTGCTAGCCATAAATGAGATTTTTGAGAGGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGGTATCAGAGTCGTACTGGGTATCACAATATGTACAAGGAATACCGAGATACTACTCTGAACGGTGCAGTTGAGCATATGTACACCGAAATGGCGTCTCGACATAGGGTGAGGCATCCATGCATCCAGATAATCAAGACTGCCACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAGGCCAAACCTGTTTATGTGA 2274 0.4327 MILKVSLIVVLLVICSCVVEAISRNHNQNPNHNNINKNGSSLAAIKFPDYPSFNDVSSSGDDCSFSNSEQLGHSGPTMTSGEETDEESEAFPAQKPHQNLVKFHLKHRSGSKDAEPKQSVVDFTLSDLTRIQNLHRRVIEKKNQNTISRLQKSQKEQPKQSYKPVVAAPAASRTTSPVSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKDSSSFRNISCHDPRCQLVSAPDPPKPCKAENQSCPYFYWYGDGSNTTGDFALETFTVNLTTPNGTSELKHVENVMFGCGHWNRGLFHGAAGLLGLGKGPLSFASQMQSLYGQSFSYCLVDRNSNASVSSKLIFGEDKELLSHPNLNFTSFGGGKDGSVDTFYYVQIKSVMVDDEVLKIPEETWHLSSEGAGGTIIDSGTTLTYFAEPAYEIIKEAFVRKIKGYQLVEGLPPLKPCYNVSGIEKMELPDFGILFADEAVWNFPVENYFIWIDPEVVCLAILGNPRSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCADVYLLKDFIRDLEWHSKSVKMVAMRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFERNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYTEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2416 757 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 586 707 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gso2g2416 757 CDD pepsin_A_like_plant 196 558 IPR034161 -
Gso2g2416 757 Hamap 50S ribosomal protein L18Ae [rpl18a]. 585 648 IPR028877 -
Gso2g2416 757 SUPERFAMILY Acid proteases 189 560 IPR021109 -
Gso2g2416 757 MobiDBLite consensus disorder prediction 144 160 - -
Gso2g2416 757 Gene3D - 651 726 - -
Gso2g2416 757 PANTHER ASPARTYL PROTEASES 47 560 IPR001461 GO:0004190|GO:0006508
Gso2g2416 757 MobiDBLite consensus disorder prediction 142 162 - -
Gso2g2416 757 MobiDBLite consensus disorder prediction 58 81 - -
Gso2g2416 757 Gene3D Acid Proteases 168 377 IPR021109 -
Gso2g2416 757 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gso2g2416 757 Pfam Xylanase inhibitor C-terminal 404 554 IPR032799 -
Gso2g2416 757 SUPERFAMILY RplX-like 650 725 - -
Gso2g2416 757 ProSiteProfiles Peptidase family A1 domain profile. 197 554 IPR033121 -
Gso2g2416 757 Gene3D - 574 650 - -
Gso2g2416 757 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 212 223 IPR001969 GO:0004190|GO:0006508
Gso2g2416 757 MobiDBLite consensus disorder prediction 58 96 - -
Gso2g2416 757 Gene3D Acid Proteases 378 563 IPR021109 -
Gso2g2416 757 Pfam Xylanase inhibitor N-terminal 197 376 IPR032861 -
Gso2g2416 757 PRINTS Pepsin (A1) aspartic protease family signature 203 223 IPR001461 GO:0004190|GO:0006508
Gso2g2416 757 PRINTS Pepsin (A1) aspartic protease family signature 435 446 IPR001461 GO:0004190|GO:0006508
Gso2g2416 757 PRINTS Pepsin (A1) aspartic protease family signature 530 545 IPR001461 GO:0004190|GO:0006508
Gso2g2416 757 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 47 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2416 Gso-Chr2 48761035 48767945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2416 579 757 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.503 1.27e-115 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0257 14 2239841 2246840 Gso2g2416 2 48761035 48767945 GST
Gso8g2554 8 42887180 42889671 Gso2g2416 2 48761035 48767945 PCT
Gso2g2416 2 48761035 48767945 Gso8g2554 8 42887180 42889671 PCT