Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2413 ATGGATGTGGCCAAGTTACATAACTCTGATGATGATGATGACAAGAAAGAAGATGAAGATGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTGGGGTTTTATCTGAGACGAAAGGTGGAGAATAAGCCTCTGAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAGTTCAGTGGGGGAGAAGGAATGGTACTTCTTTTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGAGTGACAGGTTCTGGATTTTGGAAAGCCACAGGGATTGATAAACCTATATACTGTGTTAAAGAACCCCACGAATGCATTGGTCTAAAGAAATCATTGGTCTACTATCGTGGAAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCACCCAATGGAAAAACTAGCAATAATCCACAAGCTAATGATGCTCAAGAAGCTGAAGTGTGGACGCTATGCCGAATATTGAAACGATTCCCCTCTTACAAGAAGTACACACCAAATTTGAAAGACTCAGCAGCAGCACCAATAATGACGAAGCCAAATTACCCCACAAACTCTTCAAGTACTTCCAAAACATGCAGCTTAGAATCTGACAACGGCAAGCCATACTTGACTTTCACAAACTCATTATCACCATTACTCATTCAACAAAATGAAAGGAAACCGGCTATTAATGGACATGTTGACGTTGAACGTAACCACTTATTTCTAGGTCAATTAGGCATTAATGTAGCTCAGGCTCCAACATCCTTGTCTTACTCAAGTTTTTGGAATCGTCATCATCAGAATAATGTGGAATTTGCTAATGAGAATTGGGATGATCTCACGTCTGTGGTTCAGTTTGCTAATATTGATCCATCCAGGGTTTCTGATCATTGTAAAGAATTTAATAGATTTTAA 963 0.3998 MDVAKLHNSDDDDDKKEDEDVLPGFRFHPTDEELVGFYLRRKVENKPLRIELIKQIDIYKYDPWDLPKVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTSNNPQANDAQEAEVWTLCRILKRFPSYKKYTPNLKDSAAAPIMTKPNYPTNSSSTSKTCSLESDNGKPYLTFTNSLSPLLIQQNERKPAINGHVDVERNHLFLGQLGINVAQAPTSLSYSSFWNRHHQNNVEFANENWDDLTSVVQFANIDPSRVSDHCKEFNRF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2413 320 PANTHER - 3 319 - -
Gso2g2413 320 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Gso2g2413 320 Gene3D NAC domain 30 180 IPR036093 GO:0003677|GO:0006355
Gso2g2413 320 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Gso2g2413 320 ProSiteProfiles NAC domain profile. 21 178 IPR003441 GO:0003677|GO:0006355
Gso2g2413 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 319 - -
Gso2g2413 320 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2413 Gso-Chr2 48728614 48731960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2413 3 178 NAC Transcription Factor Family AT5G39820 57.068 9.73e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso2g2413 NAM 3.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2413 - - gmx:100784323 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0262 14 2297343 2301106 Gso2g2413 2 48728614 48731960 GST
Gso18g0967 18 14796632 14799496 Gso2g2413 2 48728614 48731960 PCT
Gso8g2550 8 42825455 42831742 Gso2g2413 2 48728614 48731960 PCT
Gso2g2413 2 48728614 48731960 Gso18g0967 18 14796632 14799496 PCT
Gso2g2413 2 48728614 48731960 Gso8g2550 8 42825455 42831742 PCT