Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2407 ATGGATAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCGCCTTTCACATGGTTCTAGTAATCACAACGTGTCTTCCTCCACCAGCAATGAGCATGGGGCAAATATTGAAATTTTGAGTCTGAATAAGCTCAGTGGAAGCCTTGAGAAGCTATTGATTGAGACTGAGTATGATTATAGTGATGCTGAGATTCTTGTTGAAGACATCCCTGTGGGTATTCATCGCTGTATATTGGCGTCGCGTAGTCTGTTTTTCCATGAGCTTTTTAAGAAAGGGACTGATGGATCAGGCAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGCACAGTTGGATATGAAGCTTTCCAAGTGTTCTTGTACTATTTGTATACTGGAAGGTTAAAGGCTTCACCAACAGAAGTGACAACATGTGTCGATGAAACATGTACCCATGATGCATGCCGCCCTGCTATCAATTATGCCTTAGAGCTGATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTATGGCTGCTTTCAACTGCCAACTAGACCAGCTTCTCTCTCAGTGCATTCGTAGAGTAGCAAGGTCTGACTTTGACAACACATCTTTGGAAAAAGAGCTCCCTCGTGAAGTTGTGACTGAAATCAAATTGCTCCGACTCCCATTTCAGCCAGAATCCACACCTAATGCAATGGAAGTGGAGTCCTTGAATGAAAAGAGTATAAGGAGAATCCACAAGGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCTAGTGTCACTCTAGATGATGCACATGCCCTGCACTATGCTTGTGCCTATAGCGATTCTAAGGTTATTCAAGAAGTTCTTAGTCTAGGCATGGCTGATATTCTTCGTAGAAATTCCCGAGGATACACAGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTAGCACTACTGAATAAAGGGGCGTGTGCATCAGATACCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAGAGGTTGACGAGATACAAGGATTATCAAGAGCAAACAGTCCAGTGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTGGAGAGGGAGATGAGAAGAAATTCTATGACTGTGAATATGTCTGTTTCATCACAGCTAACAGCCAATGATTTGCACATGAGACTGGATTACCTTGAAGATAGAGTTGCATTTGCTCGGCTGTTTTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAAGCAGATTCATCGTCGATGTACGCAAACTCATCGGCTTTGAAGGGCACAAATGGCAACCTGAAACAAGTAGATCTAAATGAATCTCCCTCTGCTCATACCAGAAAACTTCAGTTAAGATTACATGCCCTTATGAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGCTCTGAAGTGCTTGATAAGTTTCTGGAAGATGACGATATGCCAGATGTTTTCTTCCTAGAGAAGGGCAGTGAAGACGAGCAGAGAATCAAGAAAGCACGCTTCATGGAACTTAAAGATGATGTGCAGAAGGCATTTCACAAGGATATGGCTGAAAATAACCATTCTGGTTTTTCATCTACGGTGTCTTCCTCATCTTCCTCAACTCGTAGGGAAGGTCTTAACCATAGAGTGAGGAGAAAATGA 1773 0.427 MDNSNDSSSSLSFVSSRLSHGSSNHNVSSSTSNEHGANIEILSLNKLSGSLEKLLIETEYDYSDAEILVEDIPVGIHRCILASRSLFFHELFKKGTDGSGKEGKPRYLMSDLVPYGTVGYEAFQVFLYYLYTGRLKASPTEVTTCVDETCTHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFNCQLDQLLSQCIRRVARSDFDNTSLEKELPREVVTEIKLLRLPFQPESTPNAMEVESLNEKSIRRIHKALDSDDVELLKLLLNESSVTLDDAHALHYACAYSDSKVIQEVLSLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGACASDTTPDGQTALAICQRLTRYKDYQEQTVQCKESNKDRLCVDVLEREMRRNSMTVNMSVSSQLTANDLHMRLDYLEDRVAFARLFFPAEARVAIENAEADSSSMYANSSALKGTNGNLKQVDLNESPSAHTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDDMPDVFFLEKGSEDEQRIKKARFMELKDDVQKAFHKDMAENNHSGFSSTVSSSSSSTRREGLNHRVRRK* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2407 590 MobiDBLite consensus disorder prediction 562 580 - -
Gso2g2407 590 Pfam Ankyrin repeats (many copies) 299 350 IPR002110 GO:0005515
Gso2g2407 590 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Gso2g2407 590 SUPERFAMILY POZ domain 60 187 IPR011333 -
Gso2g2407 590 SMART ANK_2a 295 325 IPR002110 GO:0005515
Gso2g2407 590 SMART ANK_2a 266 294 IPR002110 GO:0005515
Gso2g2407 590 SMART ANK_2a 329 358 IPR002110 GO:0005515
Gso2g2407 590 Gene3D Potassium Channel Kv1.1; Chain A 31 221 IPR011333 -
Gso2g2407 590 PANTHER REGULATORY PROTEIN NPR3 1 588 IPR044292 GO:0009862|GO:2000022|GO:2000031
Gso2g2407 590 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Gso2g2407 590 Pfam NPR1/NIM1 like defence protein C terminal 371 574 IPR021094 -
Gso2g2407 590 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Gso2g2407 590 MobiDBLite consensus disorder prediction 555 590 - -
Gso2g2407 590 CDD BTB_POZ_NPR_plant 45 189 - -
Gso2g2407 590 SUPERFAMILY Ankyrin repeat 259 373 IPR036770 -
Gso2g2407 590 Pfam BTB/POZ domain 59 145 IPR000210 GO:0005515
Gso2g2407 590 SMART BTB_4 63 189 IPR000210 GO:0005515
Gso2g2407 590 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 588 - -
Gso2g2407 590 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Gso2g2407 590 Gene3D - 263 404 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2407 Gso-Chr2 48655270 48659814 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso2g2407 NPR1_like_C 8e-85 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2407 K14508 - gmx:100816582 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0267 14 2338925 2345590 Gso2g2407 2 48655270 48659814 GST