Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2405 ATGAAAAATTCTGAGAGAAGCAGTGTAAGAAAGTACAACAAATCTGAACTTCCACGCCTGCGGTGGACACCTGAACTTCATCAACACTTTGTTGAAGCTATTCAAAGTCTAGGTGGATCACACAAGGCAACTCCAAAGCGAATTTTGCAGCAGATGCGTGTGAAAGGACTGAGGATCGCTCACATCAAAAGCCATCTTCAGATGTACAGAAACATGAAAGGACATGCCATTGTTGCACCAGTGGATCAGTTGCTGGAAGGAAAGGCAAAAGATTTCAAAATATGCTCCAATATTTGTCCAACCGAAAGGAATTTCAAGCGGGAACTTCATTTGTTAGACTACAAAGATGGGCTTTCACAAACCAGTCAAGAAACTGATTATGATCTAAACCAGGAACCACAGTCAAGTGCAGTACTCTTGCTTAGTGATGATATGTCAAATGAAGAAGAAAATTTTGCTGATCTATCATTGATCTCCTTTAGCATGCCTCTAATTTCCATGATGCAAAGTGAGAATAGCAAAGAGATAATGCGTTTTTCGTCATCGACTGCAGCTGCAGCTGCTAATCATTCCGTCGTTGATTCCAGTTCTTCTACGCCGTCTTTTGCAAACAATTACATAAACTTAGATCTAACAATCTGA 642 0.4034 MKNSERSSVRKYNKSELPRLRWTPELHQHFVEAIQSLGGSHKATPKRILQQMRVKGLRIAHIKSHLQMYRNMKGHAIVAPVDQLLEGKAKDFKICSNICPTERNFKRELHLLDYKDGLSQTSQETDYDLNQEPQSSAVLLLSDDMSNEEENFADLSLISFSMPLISMMQSENSKEIMRFSSSTAAAAANHSVVDSSSSTPSFANNYINLDLTI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2405 213 Gene3D - 17 74 - -
Gso2g2405 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 74 IPR017930 -
Gso2g2405 213 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 8 146 - -
Gso2g2405 213 SUPERFAMILY Homeodomain-like 18 71 IPR009057 -
Gso2g2405 213 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 146 IPR044848 GO:0003700
Gso2g2405 213 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
Gso2g2405 213 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2405 Gso-Chr2 48632609 48636206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2405 7 73 G2-like Transcription Factor Family AT2G42660 61.194 1.64e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso2g2405 Myb_DNA-binding 5.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2405 - - gmx:102661690 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0269 14 2361039 2363224 Gso2g2405 2 48632609 48636206 GST
Gso8g2533 8 42628924 42633595 Gso2g2405 2 48632609 48636206 PCT
Gso2g2405 2 48632609 48636206 Gso8g2533 8 42628924 42633595 PCT