Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2400 ATGAACAACAGTATTCCTGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAAAGAAAGCTCATAGGGCCGGACCAAGAACTTGTAGAGCTCCTATGGAAAAATGGGCAAGTAGTTATGCACAACCAAACACATAGGAAGACACTTGGGAATTCATCTAACTTGAGACAGGTGCAGAAAAGTGATCAATCAGTATTAAGGTCTAGCGGTCCCTATGGAAACTCAAGCAACTTGGATCAAGAAGATGCCGCCCCATGGGTCCAATTCCCACTTGAGGACCCATTGGAACAAGATTTTTGTTCAAACCTTTTATCTGAACTACCAACTTGTGAATTTGAATCTTACAAGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAAATTTTTTGCTTCCGGTACCCCCCATCATCCTACAACTTCAAGTTCACAACCACTACCACCTAACATGAAACCCTCATGTATTCAGGGACTCCAAGGGAATCCTATTCCTATGCCAGCTCCAAGATTTCATGGTCCTGATTCATCTCAGAAAATCCATGACTTTGGAGCATCACGAAAGGTTCTAAATTTTCCTCAGTTTTCAACACCCCGTAATAATGTTCCATCAGCACCTGGTATTACACAGTTTAGAGAGAAAACTACTGCTAACATGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGAGCAAGATGTAAGCAGGATTTCAAGCACTGGTGTTTGGGCCACTACTAATAATAATACTACTTTATCTGCTGAGCCTGAAGCTGTCAGAGATTATGTCCAAAGACCGATTTGTCCTAAGAGTGGCCAAGGAAAATCAGAGATGATTGAACTAACTGTGACTTCATCTTCCGGTGGCTCGGGAAGTACTGGTATCGGAAGAACCTGTTCCCTATCAACAAGAGATCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCGTTAGAGGAACAAAGTGAGGACACAGAACTTAAATCAGCTGATGGAAACAAGGCTTCTCAGCGGACGAGGTCTTCCAGAAGGAACCGTGCAGCAGAAGTGCATAATCAATCAGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGGACATTGCAGCAACTGATACCTAATAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTTATGTGGATGGGGGGTGGCATGACACCAGTGATGTTCCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGGTGCACCTTCTTTGCCTTCCATTCACAACCCGATGCAATTGCCAAAAGTGCCACATGATCAAGCCATGTCTGTGCTTCAGATACCAAACCAGAATTTAATGTGTCAAAATCCAGTTTTGGGTGCCTTTAACTACCAAAACCAGATGCAGAACCCGTGCCTTCCAGAACAATATGCACGTTACATGGGTTACCATCTTATGCAAAATGCCTCTCAGCCTATGAATGTGTTCAGATATGGTTCCCAAGCAGTGCAACACAGTCAAACGATGATTGCACCAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATATTGATGATGCTGACAGTGGCAAAGCGGGTTCTTCCACCTTTAATTGA 1689 0.4358 MNNSIPGWDFESDTCLTNQRKLIGPDQELVELLWKNGQVVMHNQTHRKTLGNSSNLRQVQKSDQSVLRSSGPYGNSSNLDQEDAAPWVQFPLEDPLEQDFCSNLLSELPTCEFESYKPIRQLEEEKFAKFFASGTPHHPTTSSSQPLPPNMKPSCIQGLQGNPIPMPAPRFHGPDSSQKIHDFGASRKVLNFPQFSTPRNNVPSAPGITQFREKTTANMSQSEAREYSVITVGSSHCGSNHIPQEQDVSRISSTGVWATTNNNTTLSAEPEAVRDYVQRPICPKSGQGKSEMIELTVTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEDTELKSADGNKASQRTRSSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGGGMTPVMFPGIQHYMSQMGMGMGAPSLPSIHNPMQLPKVPHDQAMSVLQIPNQNLMCQNPVLGAFNYQNQMQNPCLPEQYARYMGYHLMQNASQPMNVFRYGSQAVQHSQTMIAPGNNSSGPMSGTANIDDADSGKAGSSTFN* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2400 562 CDD bHLH_AtPIF_like 360 423 - -
Gso2g2400 562 Pfam Helix-loop-helix DNA-binding domain 364 410 IPR011598 GO:0046983
Gso2g2400 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 421 IPR036638 GO:0046983
Gso2g2400 562 MobiDBLite consensus disorder prediction 317 347 - -
Gso2g2400 562 MobiDBLite consensus disorder prediction 356 378 - -
Gso2g2400 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 409 IPR011598 GO:0046983
Gso2g2400 562 Coils Coil 366 386 - -
Gso2g2400 562 MobiDBLite consensus disorder prediction 297 378 - -
Gso2g2400 562 PANTHER TRANSCRIPTION FACTOR PIF5 1 538 - -
Gso2g2400 562 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 538 IPR031066 -
Gso2g2400 562 Gene3D - 355 416 IPR036638 GO:0046983
Gso2g2400 562 MobiDBLite consensus disorder prediction 297 316 - -
Gso2g2400 562 MobiDBLite consensus disorder prediction 56 81 - -
Gso2g2400 562 SMART finulus 366 415 IPR011598 GO:0046983
Gso2g2400 562 MobiDBLite consensus disorder prediction 531 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2400 Gso-Chr2 48580876 48585077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2400 1 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 29.907 2.18e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g2400 HLH 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2400 K16189 - gmx:100811777 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0275 14 2411391 2416814 Gso2g2400 2 48580876 48585077 GST
Gso8g2546 8 42776617 42781426 Gso2g2400 2 48580876 48585077 PCT
Gso8g2524 8 42525815 42531514 Gso2g2400 2 48580876 48585077 PCT
Gso2g2400 2 48580876 48585077 Gso8g2524 8 42525815 42531514 PCT