Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g2396 ATGAAGCTCTCTTCTTCTGGATTTAATCCTCCGGCTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTTTGGCATGCTTGTGCTGGCCCTCTGGTTTCTCTGCCTCCGGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCATCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCCAACTTGCCACCACAACTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCCAGCAAGCAACCAACCAACTACTTTTGCAAAACATTGACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGGCATATATTTCGCGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAACCAGTTACTCTTGGGCATACGGCGAGCGAATCGTCCGCAGACTATCATGCCATCGTCTGTTTTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACTAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGCCATTCCGTTGGCCAAGTACGTTAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCTACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCTTCTCCATTCCCCTTAAGGTTGAAGCGCCCATGGCCATCAGGCTTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATCCTTCTATACCAGGTCTCCAGCCAGAGTTATACCAAGCAATTACTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCTTTCAAAATCTTCGCAATCTCTTTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATGCTTCTGAGGTACAGAGGCAATTGTTACCACAGTCTCAGCTTCAAAACACCCTTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGTTACCACCCGTATAGTGATCAGCAGCAACAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTATGTCTAAGTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCCCTAGCTTCACATTGTCAGCAGCAGAGCTTTCCTGAACCTATGAGGAATCATATTTCCGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGGTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAGTGGATCCAATTCTGTTATGTCTTCTGCTGCCATACTGCCCAAGCAAATAACTGCCGAGCCTCCTCAGCTTCCATCTGCTGCTTCTCAGTGCATATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGCGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAGTGGCATGTCAAACCTGAGAAATATAGGCAAAGTGAACGATTCATTATCGTTGCCATTTTCTACTTCGAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTGAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTGTTCTGAAAATGTAGACCAAGCAAATATACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAACTGATTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGTTCTTAGTCCTTCTACTTCTGCCCCAGGTGACAAACTTTCTACTCCTGTCAACTCCTGTGATAATTATGTGAGTCAACAAGAGTTGAGAAGTTCGAGAAACGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2691 0.453 MKLSSSGFNPPAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFAIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDPSIPGLQPELYQAITSSAFQEMRTMDLSKSSQSLLQFQQTSNVPSAHASEVQRQLLPQSQLQNTLLHNFQENQVPAQSQLLQQQLHRYHPYSDQQQQQQQLKNLPVQQQLPNVISPMSKFASGTQSQSPPMQALASHCQQQSFPEPMRNHISGSDVSPIQSLLGSFSQDGTSQLLNLSGSNSVMSSAAILPKQITAEPPQLPSAASQCILPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQSGMSNLRNIGKVNDSLSLPFSTSNCGGATGTDFPLSSNMTTSSCVDESGFLQCSENVDQANIPTGTFVKVHKSGSFGRSLDISKFSSYDELISELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKVLSPSTSAPGDKLSTPVNSCDNYVSQQELRSSRNGMASMGSFHY* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g2396 896 Pfam AUX/IAA family 752 844 IPR033389 -
Gso2g2396 896 Gene3D - 757 851 - -
Gso2g2396 896 PANTHER AUXIN RESPONSE FACTOR 6 1 872 - -
Gso2g2396 896 CDD B3_DNA 128 229 IPR003340 GO:0003677
Gso2g2396 896 SUPERFAMILY CAD & PB1 domains 752 836 - -
Gso2g2396 896 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso2g2396 896 ProSiteProfiles PB1 domain profile. 760 846 IPR000270 GO:0005515
Gso2g2396 896 Gene3D - 127 230 IPR015300 -
Gso2g2396 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 872 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso2g2396 896 SMART B3_2 129 231 IPR003340 GO:0003677
Gso2g2396 896 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Gso2g2396 896 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Gso2g2396 896 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Gso2g2396 896 Gene3D - 293 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g2396 Gso-Chr2 48544583 48553880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g2396 98 851 B3 DNA Binding Superfamily AT5G37020 55.204 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso2g2396 AUX_IAA 4.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g2396 - - gmx:100809105 1765.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0279 14 2448159 2456770 Gso2g2396 2 48544583 48553880 GST